Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt galK and galM overlap by 7 nucleotides galM and gpmA are separated by 201 nucleotides
NIAGMN_04775: galK - galactokinase, at 867,189 to 868,337
galK
NIAGMN_04780: galM - galactose-1-epimerase, at 868,331 to 869,371
galM
NIAGMN_04785: gpmA - 2,3-diphosphoglycerate-dependent phosphoglycerate mutase, at 869,573 to 870,325
gpmA
Position (kb) 868
869
870 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 867.399 kb on + strand, within galK at 867.456 kb on + strand, within galK at 867.456 kb on + strand, within galK at 867.471 kb on + strand, within galK at 867.472 kb on - strand, within galK at 867.472 kb on - strand, within galK at 867.568 kb on + strand, within galK at 867.621 kb on + strand, within galK at 867.621 kb on + strand, within galK at 867.621 kb on + strand, within galK at 867.692 kb on + strand, within galK at 867.693 kb on - strand, within galK at 867.824 kb on + strand, within galK at 867.836 kb on + strand, within galK at 867.837 kb on - strand, within galK at 867.855 kb on + strand, within galK at 868.055 kb on + strand, within galK at 868.283 kb on + strand at 868.411 kb on - strand at 868.453 kb on + strand, within galM at 868.514 kb on + strand, within galM at 868.514 kb on + strand, within galM at 868.546 kb on + strand, within galM at 868.584 kb on - strand, within galM at 868.586 kb on - strand, within galM at 868.795 kb on + strand, within galM at 868.795 kb on + strand, within galM at 868.795 kb on + strand, within galM at 868.825 kb on + strand, within galM at 868.843 kb on + strand, within galM at 868.860 kb on - strand, within galM at 868.925 kb on + strand, within galM at 868.926 kb on - strand, within galM at 868.926 kb on - strand, within galM at 869.153 kb on + strand, within galM at 869.153 kb on + strand, within galM at 869.180 kb on + strand, within galM at 869.359 kb on + strand at 869.360 kb on - strand at 869.405 kb on - strand at 869.405 kb on - strand at 869.435 kb on - strand at 869.435 kb on - strand at 869.463 kb on + strand at 869.464 kb on - strand at 869.477 kb on - strand at 869.477 kb on - strand at 869.491 kb on + strand at 869.498 kb on - strand at 869.538 kb on + strand at 869.566 kb on + strand at 869.566 kb on + strand at 869.570 kb on + strand at 869.570 kb on + strand at 869.570 kb on + strand at 869.570 kb on + strand at 869.570 kb on + strand at 869.570 kb on + strand at 869.570 kb on + strand at 869.570 kb on + strand at 869.570 kb on + strand at 869.570 kb on + strand at 869.570 kb on + strand at 869.571 kb on - strand at 869.572 kb on + strand at 869.572 kb on + strand at 869.580 kb on + strand at 869.580 kb on + strand at 869.580 kb on + strand at 869.580 kb on + strand at 869.584 kb on + strand at 869.584 kb on + strand at 869.676 kb on + strand, within gpmA at 869.676 kb on + strand, within gpmA at 869.676 kb on + strand, within gpmA at 869.698 kb on + strand, within gpmA at 869.698 kb on + strand, within gpmA at 869.720 kb on + strand, within gpmA at 869.721 kb on - strand, within gpmA at 870.108 kb on + strand, within gpmA at 870.108 kb on + strand, within gpmA at 870.127 kb on + strand, within gpmA at 870.254 kb on + strand at 870.257 kb on + strand at 870.258 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 867,399 + galK NIAGMN_04775 0.18 +1.8 867,456 + galK NIAGMN_04775 0.23 +3.3 867,456 + galK NIAGMN_04775 0.23 +1.2 867,471 + galK NIAGMN_04775 0.25 +0.1 867,472 - galK NIAGMN_04775 0.25 -0.4 867,472 - galK NIAGMN_04775 0.25 -2.0 867,568 + galK NIAGMN_04775 0.33 +2.1 867,621 + galK NIAGMN_04775 0.38 +0.7 867,621 + galK NIAGMN_04775 0.38 +0.2 867,621 + galK NIAGMN_04775 0.38 +1.4 867,692 + galK NIAGMN_04775 0.44 +0.1 867,693 - galK NIAGMN_04775 0.44 +0.6 867,824 + galK NIAGMN_04775 0.55 +1.0 867,836 + galK NIAGMN_04775 0.56 +3.1 867,837 - galK NIAGMN_04775 0.56 -0.2 867,855 + galK NIAGMN_04775 0.58 -1.6 868,055 + galK NIAGMN_04775 0.75 +1.7 868,283 + +2.2 868,411 - +1.8 868,453 + galM NIAGMN_04780 0.12 +1.8 868,514 + galM NIAGMN_04780 0.18 +1.1 868,514 + galM NIAGMN_04780 0.18 +1.8 868,546 + galM NIAGMN_04780 0.21 +1.6 868,584 - galM NIAGMN_04780 0.24 +0.5 868,586 - galM NIAGMN_04780 0.24 +2.6 868,795 + galM NIAGMN_04780 0.45 +2.9 868,795 + galM NIAGMN_04780 0.45 +0.8 868,795 + galM NIAGMN_04780 0.45 +0.9 868,825 + galM NIAGMN_04780 0.47 +2.5 868,843 + galM NIAGMN_04780 0.49 -0.2 868,860 - galM NIAGMN_04780 0.51 -0.3 868,925 + galM NIAGMN_04780 0.57 +2.8 868,926 - galM NIAGMN_04780 0.57 +0.9 868,926 - galM NIAGMN_04780 0.57 -1.9 869,153 + galM NIAGMN_04780 0.79 +2.6 869,153 + galM NIAGMN_04780 0.79 -0.6 869,180 + galM NIAGMN_04780 0.82 +1.5 869,359 + +3.1 869,360 - +1.5 869,405 - -1.6 869,405 - -2.0 869,435 - +1.8 869,435 - +0.5 869,463 + -1.5 869,464 - +3.0 869,477 - +0.1 869,477 - -1.2 869,491 + +1.3 869,498 - +0.6 869,538 + -0.9 869,566 + -1.5 869,566 + -0.6 869,570 + -0.6 869,570 + +0.1 869,570 + -2.8 869,570 + -2.3 869,570 + +1.6 869,570 + -0.3 869,570 + -1.9 869,570 + +1.5 869,570 + +0.4 869,570 + +0.7 869,570 + -0.9 869,571 - +2.0 869,572 + +0.8 869,572 + +1.2 869,580 + -0.6 869,580 + -2.0 869,580 + +2.0 869,580 + -0.5 869,584 + -0.3 869,584 + -1.2 869,676 + gpmA NIAGMN_04785 0.14 +1.6 869,676 + gpmA NIAGMN_04785 0.14 -2.5 869,676 + gpmA NIAGMN_04785 0.14 -2.6 869,698 + gpmA NIAGMN_04785 0.17 -1.3 869,698 + gpmA NIAGMN_04785 0.17 +0.0 869,720 + gpmA NIAGMN_04785 0.20 -1.0 869,721 - gpmA NIAGMN_04785 0.20 +0.0 870,108 + gpmA NIAGMN_04785 0.71 +0.7 870,108 + gpmA NIAGMN_04785 0.71 -3.1 870,127 + gpmA NIAGMN_04785 0.74 -0.2 870,254 + -2.6 870,257 + +1.0 870,258 - +0.7
Or see this region's nucleotide sequence