Strain Fitness in Escherichia coli ECRC102 around NIAGMN_04770

Experiment: L-Arabinose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntgalT and galT are separated by 9 nucleotidesgalT and galK are separated by 3 nucleotides NIAGMN_04765: galT - galactose-1-phosphate uridylyltransferase, at 865,113 to 866,129 galT NIAGMN_04770: galT - galactose-1-phosphate uridylyltransferase, at 866,139 to 867,185 galT NIAGMN_04775: galK - galactokinase, at 867,189 to 868,337 galK Position (kb) 866 867 868Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 865.214 kb on + strandat 865.221 kb on - strand, within galTat 865.221 kb on - strand, within galTat 865.232 kb on - strand, within galTat 865.398 kb on + strand, within galTat 865.519 kb on - strand, within galTat 865.558 kb on - strand, within galTat 865.558 kb on - strand, within galTat 865.713 kb on - strand, within galTat 865.719 kb on + strand, within galTat 865.719 kb on + strand, within galTat 865.720 kb on - strand, within galTat 865.809 kb on + strand, within galTat 865.809 kb on + strand, within galTat 865.810 kb on - strand, within galTat 865.820 kb on - strand, within galTat 865.820 kb on - strand, within galTat 865.887 kb on + strand, within galTat 865.887 kb on + strand, within galTat 865.887 kb on + strand, within galTat 865.887 kb on + strand, within galTat 865.887 kb on + strand, within galTat 865.888 kb on - strand, within galTat 865.888 kb on - strand, within galTat 865.888 kb on - strand, within galTat 865.931 kb on + strand, within galTat 865.964 kb on + strand, within galTat 865.965 kb on - strand, within galTat 865.968 kb on + strand, within galTat 865.968 kb on + strand, within galTat 865.968 kb on + strand, within galTat 865.968 kb on + strand, within galTat 865.969 kb on - strand, within galTat 866.008 kb on - strand, within galTat 866.178 kb on + strandat 866.225 kb on + strandat 866.309 kb on + strand, within galTat 866.309 kb on + strand, within galTat 866.344 kb on - strand, within galTat 866.356 kb on - strand, within galTat 866.356 kb on - strand, within galTat 866.356 kb on - strand, within galTat 866.486 kb on + strand, within galTat 866.654 kb on + strand, within galTat 866.654 kb on + strand, within galTat 866.655 kb on - strand, within galTat 866.740 kb on - strand, within galTat 866.765 kb on + strand, within galTat 866.812 kb on - strand, within galTat 866.965 kb on - strand, within galTat 866.969 kb on + strand, within galTat 866.969 kb on + strand, within galTat 866.970 kb on - strand, within galTat 866.970 kb on - strand, within galTat 866.994 kb on - strand, within galTat 867.065 kb on - strand, within galTat 867.069 kb on - strand, within galTat 867.069 kb on - strand, within galTat 867.075 kb on - strand, within galTat 867.399 kb on + strand, within galKat 867.456 kb on + strand, within galKat 867.456 kb on + strand, within galKat 867.471 kb on + strand, within galKat 867.472 kb on - strand, within galKat 867.472 kb on - strand, within galKat 867.568 kb on + strand, within galKat 867.621 kb on + strand, within galKat 867.621 kb on + strand, within galKat 867.621 kb on + strand, within galKat 867.692 kb on + strand, within galKat 867.693 kb on - strand, within galKat 867.824 kb on + strand, within galKat 867.836 kb on + strand, within galKat 867.837 kb on - strand, within galKat 867.855 kb on + strand, within galKat 868.055 kb on + strand, within galK

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose
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865,214 + -2.7
865,221 - galT NIAGMN_04765 0.11 +0.0
865,221 - galT NIAGMN_04765 0.11 +0.2
865,232 - galT NIAGMN_04765 0.12 -0.1
865,398 + galT NIAGMN_04765 0.28 -2.3
865,519 - galT NIAGMN_04765 0.40 -1.8
865,558 - galT NIAGMN_04765 0.44 +0.1
865,558 - galT NIAGMN_04765 0.44 -0.5
865,713 - galT NIAGMN_04765 0.59 +2.9
865,719 + galT NIAGMN_04765 0.60 -0.5
865,719 + galT NIAGMN_04765 0.60 -1.4
865,720 - galT NIAGMN_04765 0.60 -0.4
865,809 + galT NIAGMN_04765 0.68 -3.2
865,809 + galT NIAGMN_04765 0.68 -1.4
865,810 - galT NIAGMN_04765 0.69 -1.0
865,820 - galT NIAGMN_04765 0.70 -2.1
865,820 - galT NIAGMN_04765 0.70 -2.5
865,887 + galT NIAGMN_04765 0.76 -0.4
865,887 + galT NIAGMN_04765 0.76 -2.8
865,887 + galT NIAGMN_04765 0.76 -2.7
865,887 + galT NIAGMN_04765 0.76 -1.8
865,887 + galT NIAGMN_04765 0.76 -0.4
865,888 - galT NIAGMN_04765 0.76 -1.5
865,888 - galT NIAGMN_04765 0.76 +1.5
865,888 - galT NIAGMN_04765 0.76 +0.2
865,931 + galT NIAGMN_04765 0.80 -1.4
865,964 + galT NIAGMN_04765 0.84 -2.9
865,965 - galT NIAGMN_04765 0.84 +0.7
865,968 + galT NIAGMN_04765 0.84 -1.5
865,968 + galT NIAGMN_04765 0.84 -1.5
865,968 + galT NIAGMN_04765 0.84 -1.8
865,968 + galT NIAGMN_04765 0.84 -1.5
865,969 - galT NIAGMN_04765 0.84 -0.1
866,008 - galT NIAGMN_04765 0.88 +0.6
866,178 + +0.5
866,225 + +0.2
866,309 + galT NIAGMN_04770 0.16 +0.9
866,309 + galT NIAGMN_04770 0.16 +1.1
866,344 - galT NIAGMN_04770 0.20 -1.2
866,356 - galT NIAGMN_04770 0.21 -1.5
866,356 - galT NIAGMN_04770 0.21 -0.3
866,356 - galT NIAGMN_04770 0.21 -3.4
866,486 + galT NIAGMN_04770 0.33 +2.4
866,654 + galT NIAGMN_04770 0.49 -2.6
866,654 + galT NIAGMN_04770 0.49 -3.0
866,655 - galT NIAGMN_04770 0.49 +1.6
866,740 - galT NIAGMN_04770 0.57 +0.8
866,765 + galT NIAGMN_04770 0.60 -3.9
866,812 - galT NIAGMN_04770 0.64 -1.3
866,965 - galT NIAGMN_04770 0.79 +0.2
866,969 + galT NIAGMN_04770 0.79 -0.2
866,969 + galT NIAGMN_04770 0.79 -0.5
866,970 - galT NIAGMN_04770 0.79 +1.5
866,970 - galT NIAGMN_04770 0.79 -0.0
866,994 - galT NIAGMN_04770 0.82 +2.8
867,065 - galT NIAGMN_04770 0.88 -3.6
867,069 - galT NIAGMN_04770 0.89 -1.0
867,069 - galT NIAGMN_04770 0.89 -0.2
867,075 - galT NIAGMN_04770 0.89 +0.5
867,399 + galK NIAGMN_04775 0.18 +1.8
867,456 + galK NIAGMN_04775 0.23 +3.3
867,456 + galK NIAGMN_04775 0.23 +1.2
867,471 + galK NIAGMN_04775 0.25 +0.1
867,472 - galK NIAGMN_04775 0.25 -0.4
867,472 - galK NIAGMN_04775 0.25 -2.0
867,568 + galK NIAGMN_04775 0.33 +2.1
867,621 + galK NIAGMN_04775 0.38 +0.7
867,621 + galK NIAGMN_04775 0.38 +0.2
867,621 + galK NIAGMN_04775 0.38 +1.4
867,692 + galK NIAGMN_04775 0.44 +0.1
867,693 - galK NIAGMN_04775 0.44 +0.6
867,824 + galK NIAGMN_04775 0.55 +1.0
867,836 + galK NIAGMN_04775 0.56 +3.1
867,837 - galK NIAGMN_04775 0.56 -0.2
867,855 + galK NIAGMN_04775 0.58 -1.6
868,055 + galK NIAGMN_04775 0.75 +1.7

Or see this region's nucleotide sequence