Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt NIAGMN_04685 and NIAGMN_04690 are separated by 242 nucleotides NIAGMN_04690 and int are separated by 531 nucleotides int and ybhC are separated by 134 nucleotides
NIAGMN_04685: NIAGMN_04685 - hypothetical protein, at 847,530 to 848,132
_04685
NIAGMN_04690: NIAGMN_04690 - hypothetical protein, at 848,375 to 848,542
_04690
NIAGMN_04695: int - Integrase, at 849,074 to 849,844
int
NIAGMN_04700: ybhC - putative acyl-CoA thioester hydrolase, at 849,979 to 851,262
ybhC
Position (kb) 849
850 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 848.372 kb on + strand at 848.453 kb on + strand, within NIAGMN_04690 at 848.453 kb on + strand, within NIAGMN_04690 at 848.481 kb on + strand, within NIAGMN_04690 at 848.585 kb on + strand at 848.585 kb on + strand at 848.586 kb on - strand at 848.702 kb on + strand at 848.703 kb on - strand at 848.725 kb on - strand at 848.828 kb on + strand at 848.828 kb on + strand at 848.828 kb on + strand at 848.828 kb on + strand at 848.828 kb on + strand at 848.830 kb on + strand at 848.830 kb on + strand at 848.830 kb on + strand at 848.831 kb on - strand at 848.831 kb on - strand at 848.840 kb on + strand at 848.841 kb on - strand at 848.843 kb on + strand at 848.849 kb on + strand at 848.919 kb on + strand at 848.919 kb on + strand at 848.929 kb on + strand at 848.986 kb on + strand at 849.001 kb on - strand at 849.066 kb on + strand at 849.071 kb on + strand at 849.168 kb on + strand, within int at 849.169 kb on - strand, within int at 849.169 kb on - strand, within int at 849.169 kb on - strand, within int at 849.169 kb on - strand, within int at 849.238 kb on - strand, within int at 849.238 kb on - strand, within int at 849.238 kb on - strand, within int at 849.238 kb on - strand, within int at 849.250 kb on + strand, within int at 849.252 kb on + strand, within int at 849.252 kb on + strand, within int at 849.253 kb on - strand, within int at 849.298 kb on - strand, within int at 849.313 kb on + strand, within int at 849.447 kb on + strand, within int at 849.447 kb on + strand, within int at 849.448 kb on - strand, within int at 849.486 kb on + strand, within int at 849.502 kb on + strand, within int at 849.502 kb on + strand, within int at 849.502 kb on + strand, within int at 849.585 kb on + strand, within int at 849.627 kb on + strand, within int at 849.640 kb on + strand, within int at 849.772 kb on + strand at 849.919 kb on + strand at 850.253 kb on + strand, within ybhC at 850.280 kb on + strand, within ybhC at 850.318 kb on + strand, within ybhC at 850.342 kb on + strand, within ybhC at 850.357 kb on + strand, within ybhC at 850.357 kb on + strand, within ybhC at 850.357 kb on + strand, within ybhC at 850.357 kb on + strand, within ybhC at 850.357 kb on + strand, within ybhC at 850.357 kb on + strand, within ybhC at 850.358 kb on - strand, within ybhC at 850.358 kb on - strand, within ybhC at 850.383 kb on + strand, within ybhC at 850.383 kb on + strand, within ybhC at 850.395 kb on + strand, within ybhC at 850.494 kb on + strand, within ybhC at 850.495 kb on - strand, within ybhC at 850.495 kb on - strand, within ybhC at 850.516 kb on + strand, within ybhC at 850.516 kb on + strand, within ybhC at 850.517 kb on - strand, within ybhC at 850.518 kb on + strand, within ybhC at 850.519 kb on - strand, within ybhC at 850.522 kb on + strand, within ybhC at 850.522 kb on + strand, within ybhC at 850.522 kb on + strand, within ybhC at 850.522 kb on + strand, within ybhC at 850.646 kb on + strand, within ybhC at 850.646 kb on + strand, within ybhC at 850.646 kb on + strand, within ybhC at 850.646 kb on + strand, within ybhC
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 848,372 + +0.8 848,453 + NIAGMN_04690 0.46 -1.5 848,453 + NIAGMN_04690 0.46 -0.4 848,481 + NIAGMN_04690 0.63 -1.7 848,585 + +2.1 848,585 + -0.9 848,586 - -0.3 848,702 + +0.3 848,703 - +0.7 848,725 - -0.4 848,828 + +0.4 848,828 + +1.7 848,828 + +1.1 848,828 + -0.8 848,828 + +0.0 848,830 + +1.4 848,830 + +0.8 848,830 + +0.9 848,831 - -0.1 848,831 - -1.3 848,840 + +3.7 848,841 - -0.1 848,843 + +1.7 848,849 + -0.2 848,919 + -0.1 848,919 + +1.4 848,929 + +1.2 848,986 + +0.2 849,001 - +0.3 849,066 + +0.6 849,071 + -0.5 849,168 + int NIAGMN_04695 0.12 -2.4 849,169 - int NIAGMN_04695 0.12 +1.1 849,169 - int NIAGMN_04695 0.12 -1.4 849,169 - int NIAGMN_04695 0.12 -1.8 849,169 - int NIAGMN_04695 0.12 +0.7 849,238 - int NIAGMN_04695 0.21 +0.3 849,238 - int NIAGMN_04695 0.21 -0.5 849,238 - int NIAGMN_04695 0.21 -0.4 849,238 - int NIAGMN_04695 0.21 +0.0 849,250 + int NIAGMN_04695 0.23 +0.2 849,252 + int NIAGMN_04695 0.23 -2.0 849,252 + int NIAGMN_04695 0.23 +0.1 849,253 - int NIAGMN_04695 0.23 +0.0 849,298 - int NIAGMN_04695 0.29 -0.0 849,313 + int NIAGMN_04695 0.31 -0.0 849,447 + int NIAGMN_04695 0.48 -0.8 849,447 + int NIAGMN_04695 0.48 -0.8 849,448 - int NIAGMN_04695 0.49 -0.3 849,486 + int NIAGMN_04695 0.53 +3.2 849,502 + int NIAGMN_04695 0.56 -1.5 849,502 + int NIAGMN_04695 0.56 +1.5 849,502 + int NIAGMN_04695 0.56 -0.8 849,585 + int NIAGMN_04695 0.66 -0.5 849,627 + int NIAGMN_04695 0.72 -2.0 849,640 + int NIAGMN_04695 0.73 -1.2 849,772 + -0.6 849,919 + -1.6 850,253 + ybhC NIAGMN_04700 0.21 +2.5 850,280 + ybhC NIAGMN_04700 0.23 +1.4 850,318 + ybhC NIAGMN_04700 0.26 +0.4 850,342 + ybhC NIAGMN_04700 0.28 -2.2 850,357 + ybhC NIAGMN_04700 0.29 -0.1 850,357 + ybhC NIAGMN_04700 0.29 +1.1 850,357 + ybhC NIAGMN_04700 0.29 -1.5 850,357 + ybhC NIAGMN_04700 0.29 +2.1 850,357 + ybhC NIAGMN_04700 0.29 +2.8 850,357 + ybhC NIAGMN_04700 0.29 -1.3 850,358 - ybhC NIAGMN_04700 0.30 -0.4 850,358 - ybhC NIAGMN_04700 0.30 -0.2 850,383 + ybhC NIAGMN_04700 0.31 -1.2 850,383 + ybhC NIAGMN_04700 0.31 -1.0 850,395 + ybhC NIAGMN_04700 0.32 -1.2 850,494 + ybhC NIAGMN_04700 0.40 -0.8 850,495 - ybhC NIAGMN_04700 0.40 -0.8 850,495 - ybhC NIAGMN_04700 0.40 -0.8 850,516 + ybhC NIAGMN_04700 0.42 +0.1 850,516 + ybhC NIAGMN_04700 0.42 -0.9 850,517 - ybhC NIAGMN_04700 0.42 +1.4 850,518 + ybhC NIAGMN_04700 0.42 +0.9 850,519 - ybhC NIAGMN_04700 0.42 -1.4 850,522 + ybhC NIAGMN_04700 0.42 +1.1 850,522 + ybhC NIAGMN_04700 0.42 +1.5 850,522 + ybhC NIAGMN_04700 0.42 -1.8 850,522 + ybhC NIAGMN_04700 0.42 -1.0 850,646 + ybhC NIAGMN_04700 0.52 -1.3 850,646 + ybhC NIAGMN_04700 0.52 -1.6 850,646 + ybhC NIAGMN_04700 0.52 -1.8 850,646 + ybhC NIAGMN_04700 0.52 -0.4
Or see this region's nucleotide sequence