Strain Fitness in Escherichia coli ECRC102 around NIAGMN_03335

Experiment: L-Arabinose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntNIAGMN_03330 and NIAGMN_03335 are separated by 293 nucleotidesNIAGMN_03335 and NIAGMN_03340 overlap by 4 nucleotidesNIAGMN_03340 and NIAGMN_03345 are separated by 46 nucleotidesNIAGMN_03345 and NIAGMN_03350 are separated by 49 nucleotidesNIAGMN_03350 and NIAGMN_03355 overlap by 1 nucleotides NIAGMN_03330: NIAGMN_03330 - restriction endonuclease subunit M, at 597,981 to 598,823 _03330 NIAGMN_03335: NIAGMN_03335 - DUF5983 domain-containing protein, at 599,117 to 599,608 _03335 NIAGMN_03340: NIAGMN_03340 - toxin, at 599,605 to 599,979 _03340 NIAGMN_03345: NIAGMN_03345 - antitoxin, at 600,026 to 600,400 _03345 NIAGMN_03350: NIAGMN_03350 - Phage-related protein, at 600,450 to 600,563 _03350 NIAGMN_03355: NIAGMN_03355 - DUF987 domain-containing protein, at 600,563 to 600,784 _03355 Position (kb) 599 600Strain fitness (log2 ratio) -2 -1 0 1 2 3at 598.395 kb on - strand, within NIAGMN_03330at 598.454 kb on + strand, within NIAGMN_03330at 598.482 kb on - strand, within NIAGMN_03330at 598.653 kb on - strand, within NIAGMN_03330at 598.724 kb on + strand, within NIAGMN_03330at 598.847 kb on - strandat 598.847 kb on - strandat 599.713 kb on + strand, within NIAGMN_03340at 599.953 kb on + strandat 599.953 kb on + strandat 599.982 kb on + strandat 599.982 kb on + strandat 600.223 kb on - strand, within NIAGMN_03345at 600.223 kb on - strand, within NIAGMN_03345at 600.273 kb on + strand, within NIAGMN_03345at 600.426 kb on + strandat 600.427 kb on - strandat 600.437 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose
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598,395 - NIAGMN_03330 0.49 -1.9
598,454 + NIAGMN_03330 0.56 -0.9
598,482 - NIAGMN_03330 0.59 +1.0
598,653 - NIAGMN_03330 0.80 +0.2
598,724 + NIAGMN_03330 0.88 -1.6
598,847 - -0.4
598,847 - -0.0
599,713 + NIAGMN_03340 0.29 -0.8
599,953 + +0.4
599,953 + -1.3
599,982 + -1.9
599,982 + +0.6
600,223 - NIAGMN_03345 0.53 +3.3
600,223 - NIAGMN_03345 0.53 +0.5
600,273 + NIAGMN_03345 0.66 -0.3
600,426 + -1.8
600,427 - +0.7
600,437 + -1.6

Or see this region's nucleotide sequence