Strain Fitness in Escherichia coli ECRC102 around NIAGMN_02395

Experiment: L-Arabinose

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntfliO and fliP overlap by 1 nucleotidesfliP and fliQ are separated by 9 nucleotidesfliQ and fliR are separated by 7 nucleotides NIAGMN_02385: fliO - flagellar type III secretion system protein FliO, at 421,639 to 422,004 fliO NIAGMN_02390: fliP - flagellar type III secretion system pore protein FliP, at 422,004 to 422,741 fliP NIAGMN_02395: fliQ - flagellar biosynthesis protein FliQ, at 422,751 to 423,020 fliQ NIAGMN_02400: fliR - flagellar type III secretion system protein FliR, at 423,028 to 423,813 fliR Position (kb) 422 423 424Strain fitness (log2 ratio) -2 -1 0 1at 421.944 kb on - strand, within fliOat 422.259 kb on - strand, within fliPat 422.267 kb on - strand, within fliPat 422.733 kb on + strandat 422.996 kb on + strandat 423.006 kb on + strandat 423.028 kb on - strandat 423.073 kb on + strandat 423.285 kb on + strand, within fliRat 423.388 kb on - strand, within fliRat 423.388 kb on - strand, within fliRat 423.458 kb on + strand, within fliRat 423.459 kb on - strand, within fliRat 423.646 kb on - strand, within fliRat 423.790 kb on - strandat 423.985 kb on + strandat 423.985 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose
remove
421,944 - fliO NIAGMN_02385 0.83 -1.6
422,259 - fliP NIAGMN_02390 0.35 -2.2
422,267 - fliP NIAGMN_02390 0.36 -0.8
422,733 + -0.4
422,996 + +1.0
423,006 + +0.8
423,028 - -0.4
423,073 + -1.4
423,285 + fliR NIAGMN_02400 0.33 -0.3
423,388 - fliR NIAGMN_02400 0.46 -0.5
423,388 - fliR NIAGMN_02400 0.46 -0.5
423,458 + fliR NIAGMN_02400 0.55 +0.7
423,459 - fliR NIAGMN_02400 0.55 -0.1
423,646 - fliR NIAGMN_02400 0.79 -1.0
423,790 - +0.1
423,985 + +1.7
423,985 + +1.0

Or see this region's nucleotide sequence