Strain Fitness in Escherichia coli ECRC102 around NIAGMN_01620

Experiment: L-Arabinose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyebT and rsmF overlap by 1 nucleotidesrsmF and yebV are separated by 117 nucleotidesyebV and yebW are separated by 20 nucleotidesyebW and pphA are separated by 0 nucleotides NIAGMN_01615: yebT - lipid-binding membrane homeostasis protein YebT, at 294,922 to 297,555 yebT NIAGMN_01620: rsmF - 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF, at 297,555 to 299,075 rsmF NIAGMN_01625: yebV - Uncharacterized protein YebV, at 299,193 to 299,429 yebV NIAGMN_01630: yebW - Uncharacterized protein YebW, at 299,450 to 299,725 yebW NIAGMN_01635: pphA - protein-serine/threonine phosphatase, at 299,726 to 300,382 pphA Position (kb) 297 298 299 300Strain fitness (log2 ratio) -2 -1 0 1at 296.598 kb on + strand, within yebTat 296.631 kb on + strand, within yebTat 296.965 kb on + strand, within yebTat 297.164 kb on + strand, within yebTat 297.629 kb on + strandat 297.654 kb on + strandat 299.175 kb on + strandat 299.306 kb on + strand, within yebVat 299.307 kb on - strand, within yebV

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose
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296,598 + yebT NIAGMN_01615 0.64 -1.7
296,631 + yebT NIAGMN_01615 0.65 +0.4
296,965 + yebT NIAGMN_01615 0.78 -0.6
297,164 + yebT NIAGMN_01615 0.85 -1.8
297,629 + +0.4
297,654 + +0.2
299,175 + +0.4
299,306 + yebV NIAGMN_01625 0.48 +0.7
299,307 - yebV NIAGMN_01625 0.48 -1.7

Or see this region's nucleotide sequence