Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yeaL and nimR overlap by 44 nucleotides nimR and nimT are separated by 99 nucleotides nimT and yeaO are separated by 54 nucleotides yeaO and yoaF are separated by 21 nucleotides yoaF and dgcP are separated by 182 nucleotides
NIAGMN_01380: yeaL - UPF0756 membrane protein CKO_01811, at 251,539 to 251,985
yeaL
NIAGMN_01385: nimR - DNA-binding transcriptional regulator NimR, at 251,942 to 252,760
nimR
NIAGMN_01390: nimT - 2-nitroimidazole transporter, at 252,860 to 254,041
nimT
NIAGMN_01395: yeaO - Uncharacterized protein YeaO, at 254,096 to 254,443
yeaO
NIAGMN_01400: yoaF - DUF333 domain-containing protein, at 254,465 to 254,719
yoaF
NIAGMN_01405: dgcP - Diguanylate cyclase DgcP, at 254,902 to 255,750
dgcP
Position (kb) 252
253
254
255 Strain fitness (log2 ratio) -1
0
1
2
3 at 251.984 kb on - strand at 252.038 kb on - strand, within nimR at 252.038 kb on - strand, within nimR at 252.041 kb on - strand, within nimR at 252.073 kb on + strand, within nimR at 252.517 kb on + strand, within nimR at 252.517 kb on + strand, within nimR at 252.517 kb on + strand, within nimR at 252.659 kb on + strand, within nimR at 252.671 kb on + strand, within nimR at 252.860 kb on - strand at 252.931 kb on + strand at 253.163 kb on + strand, within nimT at 253.271 kb on - strand, within nimT at 253.464 kb on + strand, within nimT at 253.981 kb on - strand at 254.054 kb on + strand at 254.434 kb on + strand at 254.435 kb on - strand at 254.844 kb on - strand at 255.007 kb on - strand, within dgcP
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 251,984 - -1.4 252,038 - nimR NIAGMN_01385 0.12 -0.7 252,038 - nimR NIAGMN_01385 0.12 +0.6 252,041 - nimR NIAGMN_01385 0.12 -0.5 252,073 + nimR NIAGMN_01385 0.16 -1.0 252,517 + nimR NIAGMN_01385 0.70 +0.7 252,517 + nimR NIAGMN_01385 0.70 +3.2 252,517 + nimR NIAGMN_01385 0.70 -0.0 252,659 + nimR NIAGMN_01385 0.88 +0.3 252,671 + nimR NIAGMN_01385 0.89 -1.4 252,860 - +0.8 252,931 + +0.1 253,163 + nimT NIAGMN_01390 0.26 -0.4 253,271 - nimT NIAGMN_01390 0.35 -0.2 253,464 + nimT NIAGMN_01390 0.51 -0.1 253,981 - -1.6 254,054 + +0.1 254,434 + -0.3 254,435 - +0.5 254,844 - +1.6 255,007 - dgcP NIAGMN_01405 0.12 +1.3
Or see this region's nucleotide sequence