Strain Fitness in Escherichia coli ECRC102 around NIAGMN_01280

Experiment: L-Arabinose

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntydjE and tnp-IS629 are separated by 152 nucleotidestnp-IS629 and tra5 overlap by 1 nucleotidestra5 and NIAGMN_01285 are separated by 281 nucleotidesNIAGMN_01285 and ydjF are separated by 117 nucleotides NIAGMN_01270: ydjE - Inner membrane metabolite transport protein YdjE, at 228,496 to 229,656 ydjE NIAGMN_01275: tnp-IS629 - IS3 family IS629 transposase, at 229,809 to 230,135 tnp-IS629 NIAGMN_01280: tra5 - IS3 family transposase, at 230,135 to 230,725 tra5 NIAGMN_01285: NIAGMN_01285 - Insertion sequence 2 OrfA protein, at 231,007 to 231,177 _01285 NIAGMN_01290: ydjF - Uncharacterized HTH-type transcriptional regulator YdjF, at 231,295 to 232,053 ydjF Position (kb) 230 231Strain fitness (log2 ratio) -1 0 1 2at 229.196 kb on - strand, within ydjEat 229.528 kb on - strand, within ydjEat 231.167 kb on + strandat 231.364 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose
remove
229,196 - ydjE NIAGMN_01270 0.60 -0.3
229,528 - ydjE NIAGMN_01270 0.89 +0.5
231,167 + -1.5
231,364 + +2.1

Or see this region's nucleotide sequence