Strain Fitness in Escherichia coli ECRC102 around NIAGMN_01080

Experiment: L-Arabinose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntkatE and chbG are separated by 46 nucleotideschbG and celF are separated by 12 nucleotides NIAGMN_01075: katE - catalase HPII, at 189,151 to 191,412 katE NIAGMN_01080: chbG - chitin disaccharide deacetylase, at 191,459 to 192,217 chbG NIAGMN_01085: celF - 6-phospho-beta-glucosidase, at 192,230 to 193,582 celF Position (kb) 191 192 193Strain fitness (log2 ratio) -2 -1 0 1 2at 190.663 kb on + strand, within katEat 190.762 kb on + strand, within katEat 190.971 kb on + strand, within katEat 191.215 kb on + strandat 191.388 kb on + strandat 191.473 kb on - strandat 191.563 kb on - strand, within chbGat 191.831 kb on - strand, within chbGat 191.831 kb on - strand, within chbGat 191.831 kb on - strand, within chbGat 192.001 kb on + strand, within chbGat 192.026 kb on - strand, within chbGat 192.349 kb on + strandat 192.377 kb on - strand, within celFat 192.506 kb on - strand, within celFat 192.569 kb on - strand, within celFat 192.598 kb on - strand, within celFat 192.753 kb on + strand, within celFat 192.799 kb on - strand, within celF

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose
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190,663 + katE NIAGMN_01075 0.67 -1.4
190,762 + katE NIAGMN_01075 0.71 -0.0
190,971 + katE NIAGMN_01075 0.80 -1.7
191,215 + +0.2
191,388 + +2.6
191,473 - +0.9
191,563 - chbG NIAGMN_01080 0.14 -0.2
191,831 - chbG NIAGMN_01080 0.49 -1.9
191,831 - chbG NIAGMN_01080 0.49 -0.5
191,831 - chbG NIAGMN_01080 0.49 -1.4
192,001 + chbG NIAGMN_01080 0.71 +0.1
192,026 - chbG NIAGMN_01080 0.75 -0.1
192,349 + +0.2
192,377 - celF NIAGMN_01085 0.11 -0.8
192,506 - celF NIAGMN_01085 0.20 -2.5
192,569 - celF NIAGMN_01085 0.25 +0.4
192,598 - celF NIAGMN_01085 0.27 -2.4
192,753 + celF NIAGMN_01085 0.39 +1.0
192,799 - celF NIAGMN_01085 0.42 -0.7

Or see this region's nucleotide sequence