Strain Fitness in Escherichia coli ECRC102 around NIAGMN_00880

Experiment: L-Arabinose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntydiF and ydiO are separated by 13 nucleotidesydiO and ydiP are separated by 42 nucleotides NIAGMN_00875: ydiF - Acetate CoA-transferase YdiF, at 150,872 to 152,467 ydiF NIAGMN_00880: ydiO - acyl-CoA dehydrogenase, at 152,481 to 153,632 ydiO NIAGMN_00885: ydiP - Uncharacterized HTH-type transcriptional regulator YdiP, at 153,675 to 154,586 ydiP Position (kb) 152 153 154Strain fitness (log2 ratio) -3 -2 -1 0 1at 151.648 kb on - strand, within ydiFat 152.877 kb on - strand, within ydiOat 152.970 kb on + strand, within ydiOat 152.972 kb on + strand, within ydiOat 153.066 kb on - strand, within ydiOat 153.092 kb on + strand, within ydiOat 153.588 kb on + strandat 153.908 kb on + strand, within ydiPat 154.368 kb on + strand, within ydiPat 154.380 kb on - strand, within ydiPat 154.402 kb on - strand, within ydiP

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose
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151,648 - ydiF NIAGMN_00875 0.49 +1.7
152,877 - ydiO NIAGMN_00880 0.34 -0.3
152,970 + ydiO NIAGMN_00880 0.42 -0.2
152,972 + ydiO NIAGMN_00880 0.43 -3.2
153,066 - ydiO NIAGMN_00880 0.51 -1.5
153,092 + ydiO NIAGMN_00880 0.53 +0.2
153,588 + +1.0
153,908 + ydiP NIAGMN_00885 0.26 -0.4
154,368 + ydiP NIAGMN_00885 0.76 +1.5
154,380 - ydiP NIAGMN_00885 0.77 +1.4
154,402 - ydiP NIAGMN_00885 0.80 -0.8

Or see this region's nucleotide sequence