Strain Fitness in Escherichia coli ECRC102 around NIAGMN_00475

Experiment: L-Arabinose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntuidR and hdhA are separated by 228 nucleotideshdhA and malI are separated by 111 nucleotides NIAGMN_00470: uidR - DNA-binding transcriptional regulator UidR, at 74,361 to 74,951 uidR NIAGMN_00475: hdhA - 7-alpha-hydroxysteroid dehydrogenase, at 75,180 to 75,947 hdhA NIAGMN_00480: malI - mal regulon transcriptional regulator MalI, at 76,059 to 77,087 malI Position (kb) 75 76Strain fitness (log2 ratio) -2 -1 0 1 2 3at 74.963 kb on - strandat 74.963 kb on - strandat 74.980 kb on - strandat 75.153 kb on - strandat 75.678 kb on - strand, within hdhAat 75.678 kb on - strand, within hdhAat 75.696 kb on - strand, within hdhAat 75.949 kb on + strandat 76.007 kb on - strandat 76.194 kb on + strand, within malIat 76.197 kb on - strand, within malIat 76.624 kb on + strand, within malI

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose
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74,963 - +0.1
74,963 - -0.1
74,980 - +0.8
75,153 - -1.7
75,678 - hdhA NIAGMN_00475 0.65 -0.2
75,678 - hdhA NIAGMN_00475 0.65 +0.3
75,696 - hdhA NIAGMN_00475 0.67 -2.0
75,949 + -1.2
76,007 - +0.1
76,194 + malI NIAGMN_00480 0.13 -1.1
76,197 - malI NIAGMN_00480 0.13 +2.8
76,624 + malI NIAGMN_00480 0.55 -1.3

Or see this region's nucleotide sequence