Strain Fitness in Escherichia coli ECRC101 around MCAODC_24640

Experiment: L-Arabinose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntycbZ and fabA overlap by 40 nucleotidesfabA and rmf are separated by 69 nucleotidesrmf and pqiC are separated by 255 nucleotides MCAODC_24635: ycbZ - Putative Lon protease-like protein, at 1,632,942 to 1,634,702 ycbZ MCAODC_24640: fabA - bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase, at 1,634,663 to 1,635,289 fabA MCAODC_24645: rmf - ribosome modulation factor, at 1,635,359 to 1,635,526 rmf MCAODC_24650: pqiC - membrane integrity-associated transporter subunit PqiC, at 1,635,782 to 1,636,345 pqiC Position (kb) 1634 1635 1636Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1633.712 kb on + strand, within ycbZat 1633.720 kb on + strand, within ycbZat 1633.720 kb on + strand, within ycbZat 1633.720 kb on + strand, within ycbZat 1633.720 kb on + strand, within ycbZat 1633.754 kb on + strand, within ycbZat 1633.773 kb on + strand, within ycbZat 1633.931 kb on + strand, within ycbZat 1633.931 kb on + strand, within ycbZat 1633.932 kb on - strand, within ycbZat 1634.061 kb on - strand, within ycbZat 1634.075 kb on + strand, within ycbZat 1634.232 kb on + strand, within ycbZat 1634.374 kb on + strand, within ycbZat 1634.470 kb on + strand, within ycbZat 1634.470 kb on + strand, within ycbZat 1634.500 kb on + strand, within ycbZat 1634.530 kb on + strandat 1634.672 kb on - strandat 1635.291 kb on + strandat 1635.306 kb on + strandat 1635.368 kb on + strandat 1635.369 kb on - strandat 1635.369 kb on - strandat 1635.543 kb on - strandat 1635.575 kb on - strandat 1635.596 kb on - strandat 1635.596 kb on - strandat 1635.602 kb on + strandat 1635.652 kb on - strandat 1635.652 kb on - strandat 1635.720 kb on - strandat 1635.788 kb on + strandat 1635.789 kb on - strandat 1635.798 kb on - strandat 1635.812 kb on - strandat 1635.812 kb on - strandat 1635.976 kb on + strand, within pqiCat 1636.135 kb on - strand, within pqiCat 1636.135 kb on - strand, within pqiCat 1636.180 kb on - strand, within pqiCat 1636.203 kb on - strand, within pqiCat 1636.209 kb on - strand, within pqiCat 1636.263 kb on - strand, within pqiCat 1636.273 kb on - strand, within pqiC

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose
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1,633,712 + ycbZ MCAODC_24635 0.44 +2.5
1,633,720 + ycbZ MCAODC_24635 0.44 +0.2
1,633,720 + ycbZ MCAODC_24635 0.44 -1.6
1,633,720 + ycbZ MCAODC_24635 0.44 -0.1
1,633,720 + ycbZ MCAODC_24635 0.44 -0.8
1,633,754 + ycbZ MCAODC_24635 0.46 -0.2
1,633,773 + ycbZ MCAODC_24635 0.47 -0.8
1,633,931 + ycbZ MCAODC_24635 0.56 +0.8
1,633,931 + ycbZ MCAODC_24635 0.56 -0.3
1,633,932 - ycbZ MCAODC_24635 0.56 -0.5
1,634,061 - ycbZ MCAODC_24635 0.64 -0.5
1,634,075 + ycbZ MCAODC_24635 0.64 +0.3
1,634,232 + ycbZ MCAODC_24635 0.73 -0.3
1,634,374 + ycbZ MCAODC_24635 0.81 +0.2
1,634,470 + ycbZ MCAODC_24635 0.87 -0.4
1,634,470 + ycbZ MCAODC_24635 0.87 +0.2
1,634,500 + ycbZ MCAODC_24635 0.88 +2.1
1,634,530 + +0.3
1,634,672 - +0.4
1,635,291 + +0.5
1,635,306 + +0.6
1,635,368 + +2.4
1,635,369 - -1.0
1,635,369 - -0.1
1,635,543 - -0.9
1,635,575 - -0.3
1,635,596 - +1.3
1,635,596 - -0.9
1,635,602 + -3.0
1,635,652 - -2.9
1,635,652 - +1.8
1,635,720 - +1.6
1,635,788 + +0.0
1,635,789 - -2.4
1,635,798 - +1.0
1,635,812 - -0.6
1,635,812 - -0.5
1,635,976 + pqiC MCAODC_24650 0.34 -1.3
1,636,135 - pqiC MCAODC_24650 0.63 +0.9
1,636,135 - pqiC MCAODC_24650 0.63 -0.9
1,636,180 - pqiC MCAODC_24650 0.71 +1.1
1,636,203 - pqiC MCAODC_24650 0.75 +1.5
1,636,209 - pqiC MCAODC_24650 0.76 +0.3
1,636,263 - pqiC MCAODC_24650 0.85 -0.1
1,636,273 - pqiC MCAODC_24650 0.87 +2.3

Or see this region's nucleotide sequence