Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ser_trna and yccA are separated by 206 nucleotides yccA and tusE are separated by 90 nucleotides tusE and yccX overlap by 4 nucleotides yccX and rlmI are separated by 109 nucleotides
MCAODC_24555: Ser_trna - tRNA-Ser(tga), at 1,619,528 to 1,619,617
_trna
MCAODC_24560: yccA - FtsH protease modulator YccA, at 1,619,824 to 1,620,483
yccA
MCAODC_24565: tusE - sulfurtransferase TusE, at 1,620,574 to 1,620,903
tusE
MCAODC_24570: yccX - acylphosphatase, at 1,620,900 to 1,621,178
yccX
MCAODC_24575: rlmI - 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI, at 1,621,288 to 1,622,463
rlmI
Position (kb)
1620
1621 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 1619.620 kb on + strand at 1619.620 kb on + strand at 1619.625 kb on + strand at 1619.626 kb on - strand at 1619.633 kb on + strand at 1619.633 kb on + strand at 1619.637 kb on + strand at 1619.684 kb on + strand at 1619.685 kb on - strand at 1619.685 kb on - strand at 1619.686 kb on + strand at 1619.686 kb on + strand at 1619.686 kb on + strand at 1619.686 kb on + strand at 1619.687 kb on - strand at 1619.694 kb on + strand at 1619.694 kb on + strand at 1619.705 kb on + strand at 1619.706 kb on - strand at 1619.706 kb on - strand at 1619.741 kb on - strand at 1619.750 kb on + strand at 1619.756 kb on + strand at 1619.783 kb on - strand at 1619.791 kb on + strand at 1619.792 kb on - strand at 1619.792 kb on - strand at 1619.800 kb on - strand at 1619.810 kb on + strand at 1619.832 kb on + strand at 1619.838 kb on + strand at 1619.856 kb on + strand at 1619.856 kb on + strand at 1619.868 kb on + strand at 1619.877 kb on + strand at 1619.896 kb on + strand, within yccA at 1620.001 kb on + strand, within yccA at 1620.001 kb on + strand, within yccA at 1620.001 kb on + strand, within yccA at 1620.001 kb on + strand, within yccA at 1620.001 kb on + strand, within yccA at 1620.001 kb on + strand, within yccA at 1620.001 kb on + strand, within yccA at 1620.002 kb on - strand, within yccA at 1620.088 kb on - strand, within yccA at 1620.112 kb on + strand, within yccA at 1620.112 kb on + strand, within yccA at 1620.167 kb on + strand, within yccA at 1620.190 kb on + strand, within yccA at 1620.213 kb on + strand, within yccA at 1620.231 kb on + strand, within yccA at 1620.267 kb on + strand, within yccA at 1620.267 kb on + strand, within yccA at 1620.276 kb on + strand, within yccA at 1620.277 kb on - strand, within yccA at 1620.277 kb on - strand, within yccA at 1620.349 kb on - strand, within yccA at 1620.394 kb on + strand, within yccA at 1620.394 kb on + strand, within yccA at 1620.394 kb on + strand, within yccA at 1620.394 kb on + strand, within yccA at 1620.396 kb on + strand, within yccA at 1620.418 kb on + strand at 1620.418 kb on + strand at 1620.431 kb on - strand at 1620.506 kb on - strand at 1620.558 kb on + strand at 1620.563 kb on + strand at 1620.569 kb on + strand at 1620.573 kb on + strand at 1620.994 kb on - strand, within yccX at 1621.015 kb on - strand, within yccX at 1621.105 kb on + strand, within yccX at 1621.105 kb on + strand, within yccX at 1621.106 kb on - strand, within yccX at 1621.117 kb on + strand, within yccX at 1621.272 kb on + strand at 1621.280 kb on + strand at 1621.286 kb on + strand at 1621.368 kb on + strand at 1621.368 kb on + strand at 1621.491 kb on + strand, within rlmI at 1621.576 kb on + strand, within rlmI at 1621.577 kb on - strand, within rlmI at 1621.583 kb on + strand, within rlmI at 1621.617 kb on + strand, within rlmI at 1621.618 kb on - strand, within rlmI at 1621.618 kb on - strand, within rlmI at 1621.618 kb on - strand, within rlmI at 1621.618 kb on - strand, within rlmI at 1621.618 kb on - strand, within rlmI at 1621.618 kb on - strand, within rlmI at 1621.620 kb on + strand, within rlmI at 1621.692 kb on - strand, within rlmI at 1621.695 kb on + strand, within rlmI at 1621.695 kb on + strand, within rlmI at 1621.696 kb on - strand, within rlmI at 1621.758 kb on + strand, within rlmI at 1621.758 kb on + strand, within rlmI at 1621.859 kb on + strand, within rlmI at 1621.860 kb on - strand, within rlmI at 1621.860 kb on - strand, within rlmI at 1621.885 kb on + strand, within rlmI at 1621.885 kb on + strand, within rlmI
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 1,619,620 + +0.1 1,619,620 + +1.6 1,619,625 + +0.3 1,619,626 - -1.6 1,619,633 + +0.5 1,619,633 + +0.4 1,619,637 + -0.4 1,619,684 + -1.2 1,619,685 - -0.9 1,619,685 - -1.3 1,619,686 + +0.3 1,619,686 + -1.6 1,619,686 + -0.6 1,619,686 + -3.9 1,619,687 - -0.3 1,619,694 + -0.0 1,619,694 + -0.1 1,619,705 + +0.8 1,619,706 - +0.8 1,619,706 - +0.8 1,619,741 - +0.9 1,619,750 + -2.0 1,619,756 + -0.9 1,619,783 - +2.2 1,619,791 + +0.4 1,619,792 - +1.0 1,619,792 - -0.7 1,619,800 - -0.3 1,619,810 + -2.7 1,619,832 + +1.4 1,619,838 + +0.8 1,619,856 + +0.5 1,619,856 + -3.2 1,619,868 + +0.6 1,619,877 + -2.3 1,619,896 + yccA MCAODC_24560 0.11 +0.4 1,620,001 + yccA MCAODC_24560 0.27 -0.9 1,620,001 + yccA MCAODC_24560 0.27 -2.5 1,620,001 + yccA MCAODC_24560 0.27 -1.4 1,620,001 + yccA MCAODC_24560 0.27 +0.7 1,620,001 + yccA MCAODC_24560 0.27 +0.2 1,620,001 + yccA MCAODC_24560 0.27 -0.5 1,620,001 + yccA MCAODC_24560 0.27 +1.1 1,620,002 - yccA MCAODC_24560 0.27 -1.7 1,620,088 - yccA MCAODC_24560 0.40 -1.8 1,620,112 + yccA MCAODC_24560 0.44 -2.4 1,620,112 + yccA MCAODC_24560 0.44 -0.0 1,620,167 + yccA MCAODC_24560 0.52 +0.5 1,620,190 + yccA MCAODC_24560 0.55 -1.5 1,620,213 + yccA MCAODC_24560 0.59 -0.3 1,620,231 + yccA MCAODC_24560 0.62 +1.6 1,620,267 + yccA MCAODC_24560 0.67 +1.3 1,620,267 + yccA MCAODC_24560 0.67 +1.1 1,620,276 + yccA MCAODC_24560 0.68 +0.1 1,620,277 - yccA MCAODC_24560 0.69 +0.5 1,620,277 - yccA MCAODC_24560 0.69 -2.4 1,620,349 - yccA MCAODC_24560 0.80 -2.1 1,620,394 + yccA MCAODC_24560 0.86 +0.3 1,620,394 + yccA MCAODC_24560 0.86 -0.7 1,620,394 + yccA MCAODC_24560 0.86 +0.7 1,620,394 + yccA MCAODC_24560 0.86 -1.2 1,620,396 + yccA MCAODC_24560 0.87 +0.3 1,620,418 + +0.7 1,620,418 + -0.7 1,620,431 - +0.8 1,620,506 - +0.7 1,620,558 + -1.0 1,620,563 + -1.5 1,620,569 + +0.7 1,620,573 + -1.6 1,620,994 - yccX MCAODC_24570 0.34 -0.3 1,621,015 - yccX MCAODC_24570 0.41 -2.3 1,621,105 + yccX MCAODC_24570 0.73 +0.8 1,621,105 + yccX MCAODC_24570 0.73 +0.0 1,621,106 - yccX MCAODC_24570 0.74 -0.7 1,621,117 + yccX MCAODC_24570 0.78 +0.3 1,621,272 + -0.7 1,621,280 + +1.2 1,621,286 + +0.3 1,621,368 + +0.9 1,621,368 + -3.1 1,621,491 + rlmI MCAODC_24575 0.17 -0.9 1,621,576 + rlmI MCAODC_24575 0.24 +1.6 1,621,577 - rlmI MCAODC_24575 0.25 +0.7 1,621,583 + rlmI MCAODC_24575 0.25 +0.7 1,621,617 + rlmI MCAODC_24575 0.28 -2.5 1,621,618 - rlmI MCAODC_24575 0.28 -0.2 1,621,618 - rlmI MCAODC_24575 0.28 +0.6 1,621,618 - rlmI MCAODC_24575 0.28 -0.1 1,621,618 - rlmI MCAODC_24575 0.28 -2.8 1,621,618 - rlmI MCAODC_24575 0.28 -0.8 1,621,618 - rlmI MCAODC_24575 0.28 +0.6 1,621,620 + rlmI MCAODC_24575 0.28 +2.6 1,621,692 - rlmI MCAODC_24575 0.34 -0.3 1,621,695 + rlmI MCAODC_24575 0.35 -0.1 1,621,695 + rlmI MCAODC_24575 0.35 +0.8 1,621,696 - rlmI MCAODC_24575 0.35 +0.2 1,621,758 + rlmI MCAODC_24575 0.40 -1.0 1,621,758 + rlmI MCAODC_24575 0.40 +1.0 1,621,859 + rlmI MCAODC_24575 0.49 +0.7 1,621,860 - rlmI MCAODC_24575 0.49 +1.4 1,621,860 - rlmI MCAODC_24575 0.49 +0.4 1,621,885 + rlmI MCAODC_24575 0.51 +1.0 1,621,885 + rlmI MCAODC_24575 0.51 +0.3
Or see this region's nucleotide sequence