Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yegI and pphC overlap by 4 nucleotides pphC and terY are separated by 77 nucleotides terY and ibsA are separated by 220 nucleotides
MCAODC_20695: yegI - protein kinase YegI, at 952,769 to 954,709
yegI
MCAODC_20700: pphC - Serine/threonine-protein phosphatase 3, at 954,706 to 955,386
pphC
MCAODC_20705: terY - Uncharacterized protein YegL, at 955,464 to 956,123
terY
MCAODC_20715: ibsA - Small toxic protein IbsA, at 956,344 to 956,403
ibsA
Position (kb) 954
955
956 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 953.709 kb on + strand, within yegI at 953.766 kb on + strand, within yegI at 953.811 kb on - strand, within yegI at 953.814 kb on - strand, within yegI at 953.948 kb on + strand, within yegI at 953.999 kb on - strand, within yegI at 954.192 kb on - strand, within yegI at 954.263 kb on + strand, within yegI at 954.264 kb on - strand, within yegI at 954.268 kb on + strand, within yegI at 954.284 kb on + strand, within yegI at 954.284 kb on + strand, within yegI at 954.319 kb on + strand, within yegI at 954.338 kb on - strand, within yegI at 954.351 kb on + strand, within yegI at 954.352 kb on - strand, within yegI at 954.352 kb on - strand, within yegI at 954.352 kb on - strand, within yegI at 954.357 kb on - strand, within yegI at 954.408 kb on + strand, within yegI at 954.408 kb on + strand, within yegI at 954.408 kb on + strand, within yegI at 954.409 kb on - strand, within yegI at 954.409 kb on - strand, within yegI at 954.409 kb on - strand, within yegI at 954.409 kb on - strand, within yegI at 954.415 kb on + strand, within yegI at 954.415 kb on + strand, within yegI at 954.416 kb on - strand, within yegI at 954.416 kb on - strand, within yegI at 954.416 kb on - strand, within yegI at 954.511 kb on - strand, within yegI at 954.544 kb on + strand at 954.544 kb on + strand at 954.628 kb on - strand at 954.691 kb on + strand at 954.691 kb on + strand at 954.691 kb on + strand at 954.692 kb on - strand at 954.692 kb on - strand at 954.692 kb on - strand at 954.693 kb on + strand at 954.693 kb on + strand at 954.693 kb on + strand at 954.694 kb on - strand at 954.694 kb on - strand at 954.695 kb on + strand at 954.696 kb on - strand at 954.696 kb on - strand at 954.712 kb on + strand at 954.738 kb on + strand at 954.739 kb on - strand at 955.010 kb on + strand, within pphC at 955.011 kb on - strand, within pphC at 955.030 kb on - strand, within pphC at 955.037 kb on - strand, within pphC at 955.037 kb on - strand, within pphC at 955.153 kb on + strand, within pphC at 955.206 kb on + strand, within pphC at 955.265 kb on + strand, within pphC at 955.266 kb on - strand, within pphC at 955.266 kb on - strand, within pphC at 955.266 kb on - strand, within pphC at 955.408 kb on + strand at 955.408 kb on + strand at 955.409 kb on - strand at 955.409 kb on - strand at 955.409 kb on - strand at 955.449 kb on - strand at 955.576 kb on - strand, within terY at 955.625 kb on + strand, within terY at 955.671 kb on - strand, within terY at 955.671 kb on - strand, within terY at 955.760 kb on - strand, within terY at 955.763 kb on - strand, within terY at 955.770 kb on - strand, within terY at 955.932 kb on - strand, within terY at 955.932 kb on - strand, within terY at 955.989 kb on - strand, within terY at 956.138 kb on + strand at 956.164 kb on + strand at 956.185 kb on - strand at 956.240 kb on - strand at 956.277 kb on + strand at 956.278 kb on - strand at 956.345 kb on + strand at 956.345 kb on + strand at 956.345 kb on + strand at 956.346 kb on - strand at 956.349 kb on - strand at 956.349 kb on - strand at 956.361 kb on + strand, within ibsA at 956.362 kb on - strand, within ibsA at 956.369 kb on - strand, within ibsA at 956.374 kb on + strand, within ibsA at 956.374 kb on + strand, within ibsA at 956.383 kb on + strand, within ibsA at 956.384 kb on - strand, within ibsA
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 953,709 + yegI MCAODC_20695 0.48 -3.3 953,766 + yegI MCAODC_20695 0.51 +0.7 953,811 - yegI MCAODC_20695 0.54 -1.5 953,814 - yegI MCAODC_20695 0.54 +2.1 953,948 + yegI MCAODC_20695 0.61 +0.5 953,999 - yegI MCAODC_20695 0.63 -1.2 954,192 - yegI MCAODC_20695 0.73 +1.0 954,263 + yegI MCAODC_20695 0.77 -0.6 954,264 - yegI MCAODC_20695 0.77 +0.8 954,268 + yegI MCAODC_20695 0.77 -0.0 954,284 + yegI MCAODC_20695 0.78 +1.1 954,284 + yegI MCAODC_20695 0.78 +0.2 954,319 + yegI MCAODC_20695 0.80 -1.0 954,338 - yegI MCAODC_20695 0.81 -2.2 954,351 + yegI MCAODC_20695 0.82 +2.3 954,352 - yegI MCAODC_20695 0.82 -2.4 954,352 - yegI MCAODC_20695 0.82 +0.0 954,352 - yegI MCAODC_20695 0.82 -1.3 954,357 - yegI MCAODC_20695 0.82 +0.1 954,408 + yegI MCAODC_20695 0.84 +0.7 954,408 + yegI MCAODC_20695 0.84 -1.0 954,408 + yegI MCAODC_20695 0.84 +0.4 954,409 - yegI MCAODC_20695 0.84 -0.5 954,409 - yegI MCAODC_20695 0.84 -2.2 954,409 - yegI MCAODC_20695 0.84 +0.0 954,409 - yegI MCAODC_20695 0.84 -0.0 954,415 + yegI MCAODC_20695 0.85 +0.4 954,415 + yegI MCAODC_20695 0.85 +1.3 954,416 - yegI MCAODC_20695 0.85 +2.7 954,416 - yegI MCAODC_20695 0.85 +0.9 954,416 - yegI MCAODC_20695 0.85 +0.8 954,511 - yegI MCAODC_20695 0.90 -0.5 954,544 + +1.0 954,544 + -0.7 954,628 - +0.7 954,691 + -0.9 954,691 + -1.2 954,691 + -0.6 954,692 - -0.1 954,692 - +0.5 954,692 - +1.5 954,693 + -0.1 954,693 + +0.2 954,693 + -0.3 954,694 - -1.3 954,694 - -1.9 954,695 + +0.7 954,696 - +1.7 954,696 - +0.8 954,712 + +0.2 954,738 + -3.4 954,739 - +1.2 955,010 + pphC MCAODC_20700 0.45 +0.3 955,011 - pphC MCAODC_20700 0.45 -0.3 955,030 - pphC MCAODC_20700 0.48 -0.1 955,037 - pphC MCAODC_20700 0.49 +1.3 955,037 - pphC MCAODC_20700 0.49 +0.6 955,153 + pphC MCAODC_20700 0.66 -1.4 955,206 + pphC MCAODC_20700 0.73 +0.6 955,265 + pphC MCAODC_20700 0.82 +0.4 955,266 - pphC MCAODC_20700 0.82 -0.1 955,266 - pphC MCAODC_20700 0.82 -1.7 955,266 - pphC MCAODC_20700 0.82 -0.1 955,408 + +0.0 955,408 + -2.2 955,409 - +0.4 955,409 - +0.6 955,409 - +1.3 955,449 - -0.6 955,576 - terY MCAODC_20705 0.17 +0.8 955,625 + terY MCAODC_20705 0.24 +0.3 955,671 - terY MCAODC_20705 0.31 +0.5 955,671 - terY MCAODC_20705 0.31 -1.8 955,760 - terY MCAODC_20705 0.45 +0.6 955,763 - terY MCAODC_20705 0.45 -0.5 955,770 - terY MCAODC_20705 0.46 -3.3 955,932 - terY MCAODC_20705 0.71 +1.6 955,932 - terY MCAODC_20705 0.71 +0.1 955,989 - terY MCAODC_20705 0.80 +0.4 956,138 + +1.3 956,164 + -0.4 956,185 - +0.4 956,240 - +0.4 956,277 + -2.4 956,278 - +0.8 956,345 + -0.9 956,345 + +0.6 956,345 + +0.2 956,346 - +2.4 956,349 - -0.3 956,349 - +0.9 956,361 + ibsA MCAODC_20715 0.28 +0.5 956,362 - ibsA MCAODC_20715 0.30 +2.4 956,369 - ibsA MCAODC_20715 0.42 +1.5 956,374 + ibsA MCAODC_20715 0.50 +0.3 956,374 + ibsA MCAODC_20715 0.50 -2.9 956,383 + ibsA MCAODC_20715 0.65 +2.1 956,384 - ibsA MCAODC_20715 0.67 +0.5
Or see this region's nucleotide sequence