Strain Fitness in Escherichia coli ECRC101 around MCAODC_19390

Experiment: L-Arabinose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntxerD and MCAODC_19385 are separated by 5 nucleotidesMCAODC_19385 and MCAODC_19390 are separated by 29 nucleotidesMCAODC_19390 and MCAODC_19395 are separated by 15 nucleotidesMCAODC_19395 and MCAODC_19400 are separated by 298 nucleotidesMCAODC_19400 and MCAODC_19405 are separated by 21 nucleotides MCAODC_19380: xerD - integrase, at 722,395 to 723,396 xerD MCAODC_19385: MCAODC_19385 - DUF2511 domain-containing protein, at 723,402 to 723,749 _19385 MCAODC_19390: MCAODC_19390 - Putative transmembrane protein, at 723,779 to 724,429 _19390 MCAODC_19395: MCAODC_19395 - transcriptional regulator, at 724,445 to 724,849 _19395 MCAODC_19400: MCAODC_19400 - DNA-binding protein, at 725,148 to 725,351 _19400 MCAODC_19405: MCAODC_19405 - DUF4761 domain-containing protein, at 725,373 to 725,723 _19405 Position (kb) 723 724 725Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 722.879 kb on - strand, within xerDat 722.990 kb on - strand, within xerDat 722.990 kb on - strand, within xerDat 722.990 kb on - strand, within xerDat 722.994 kb on - strand, within xerDat 723.081 kb on + strand, within xerDat 723.188 kb on + strand, within xerDat 723.188 kb on + strand, within xerDat 723.189 kb on - strand, within xerDat 723.189 kb on - strand, within xerDat 723.261 kb on + strand, within xerDat 723.284 kb on + strand, within xerDat 723.285 kb on - strand, within xerDat 723.370 kb on - strandat 723.407 kb on + strandat 723.407 kb on + strandat 723.476 kb on + strand, within MCAODC_19385at 723.477 kb on - strand, within MCAODC_19385at 723.501 kb on - strand, within MCAODC_19385at 723.505 kb on - strand, within MCAODC_19385at 723.562 kb on - strand, within MCAODC_19385at 723.562 kb on - strand, within MCAODC_19385at 723.570 kb on - strand, within MCAODC_19385at 723.675 kb on - strand, within MCAODC_19385at 723.869 kb on + strand, within MCAODC_19390at 724.062 kb on - strand, within MCAODC_19390at 724.074 kb on - strand, within MCAODC_19390at 724.103 kb on - strand, within MCAODC_19390at 724.145 kb on - strand, within MCAODC_19390at 724.163 kb on - strand, within MCAODC_19390at 724.211 kb on - strand, within MCAODC_19390at 724.243 kb on + strand, within MCAODC_19390at 724.337 kb on - strand, within MCAODC_19390at 724.351 kb on - strand, within MCAODC_19390at 724.351 kb on - strand, within MCAODC_19390at 724.444 kb on - strandat 724.457 kb on - strandat 724.468 kb on - strandat 724.468 kb on - strandat 724.901 kb on - strandat 724.903 kb on + strandat 724.904 kb on - strandat 724.916 kb on + strandat 724.917 kb on - strandat 724.918 kb on + strandat 724.918 kb on + strandat 724.918 kb on + strandat 724.918 kb on + strandat 724.918 kb on + strandat 724.918 kb on + strandat 724.919 kb on - strandat 724.919 kb on - strandat 725.041 kb on + strandat 725.063 kb on - strandat 725.095 kb on - strandat 725.141 kb on + strandat 725.157 kb on - strandat 725.158 kb on + strandat 725.159 kb on - strandat 725.169 kb on - strand, within MCAODC_19400at 725.169 kb on - strand, within MCAODC_19400at 725.187 kb on + strand, within MCAODC_19400at 725.187 kb on + strand, within MCAODC_19400at 725.191 kb on + strand, within MCAODC_19400at 725.191 kb on + strand, within MCAODC_19400at 725.215 kb on + strand, within MCAODC_19400at 725.222 kb on + strand, within MCAODC_19400at 725.223 kb on - strand, within MCAODC_19400at 725.223 kb on - strand, within MCAODC_19400at 725.223 kb on - strand, within MCAODC_19400at 725.232 kb on - strand, within MCAODC_19400at 725.232 kb on - strand, within MCAODC_19400at 725.234 kb on + strand, within MCAODC_19400at 725.234 kb on + strand, within MCAODC_19400at 725.235 kb on - strand, within MCAODC_19400at 725.267 kb on + strand, within MCAODC_19400at 725.309 kb on - strand, within MCAODC_19400at 725.327 kb on - strand, within MCAODC_19400at 725.349 kb on + strandat 725.349 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose
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722,879 - xerD MCAODC_19380 0.48 -1.1
722,990 - xerD MCAODC_19380 0.59 +0.1
722,990 - xerD MCAODC_19380 0.59 +1.7
722,990 - xerD MCAODC_19380 0.59 -0.2
722,994 - xerD MCAODC_19380 0.60 -0.8
723,081 + xerD MCAODC_19380 0.68 -1.6
723,188 + xerD MCAODC_19380 0.79 -3.9
723,188 + xerD MCAODC_19380 0.79 -0.6
723,189 - xerD MCAODC_19380 0.79 +0.4
723,189 - xerD MCAODC_19380 0.79 +0.4
723,261 + xerD MCAODC_19380 0.86 +0.4
723,284 + xerD MCAODC_19380 0.89 +0.2
723,285 - xerD MCAODC_19380 0.89 +1.0
723,370 - +0.6
723,407 + +0.2
723,407 + -3.4
723,476 + MCAODC_19385 0.21 -0.2
723,477 - MCAODC_19385 0.22 +0.5
723,501 - MCAODC_19385 0.28 -2.2
723,505 - MCAODC_19385 0.30 +2.1
723,562 - MCAODC_19385 0.46 +0.2
723,562 - MCAODC_19385 0.46 +0.8
723,570 - MCAODC_19385 0.48 +0.6
723,675 - MCAODC_19385 0.78 -0.7
723,869 + MCAODC_19390 0.14 -0.5
724,062 - MCAODC_19390 0.43 -0.5
724,074 - MCAODC_19390 0.45 -0.7
724,103 - MCAODC_19390 0.50 -0.2
724,145 - MCAODC_19390 0.56 +1.2
724,163 - MCAODC_19390 0.59 -1.5
724,211 - MCAODC_19390 0.66 -1.9
724,243 + MCAODC_19390 0.71 +0.2
724,337 - MCAODC_19390 0.86 +1.1
724,351 - MCAODC_19390 0.88 -0.5
724,351 - MCAODC_19390 0.88 +1.1
724,444 - -1.3
724,457 - -0.0
724,468 - -3.2
724,468 - +0.4
724,901 - -2.7
724,903 + -3.4
724,904 - -0.8
724,916 + +0.3
724,917 - -1.0
724,918 + +0.6
724,918 + -1.4
724,918 + -1.4
724,918 + +1.9
724,918 + -0.7
724,918 + -1.6
724,919 - +0.1
724,919 - -0.4
725,041 + +1.7
725,063 - +0.0
725,095 - +0.3
725,141 + -0.2
725,157 - +0.9
725,158 + +0.3
725,159 - -0.1
725,169 - MCAODC_19400 0.10 -1.5
725,169 - MCAODC_19400 0.10 +0.4
725,187 + MCAODC_19400 0.19 +0.5
725,187 + MCAODC_19400 0.19 -0.8
725,191 + MCAODC_19400 0.21 +0.7
725,191 + MCAODC_19400 0.21 -1.2
725,215 + MCAODC_19400 0.33 +1.1
725,222 + MCAODC_19400 0.36 -0.0
725,223 - MCAODC_19400 0.37 +1.4
725,223 - MCAODC_19400 0.37 +0.2
725,223 - MCAODC_19400 0.37 -0.1
725,232 - MCAODC_19400 0.41 -0.8
725,232 - MCAODC_19400 0.41 +1.0
725,234 + MCAODC_19400 0.42 +0.3
725,234 + MCAODC_19400 0.42 -1.3
725,235 - MCAODC_19400 0.43 +0.3
725,267 + MCAODC_19400 0.58 -1.9
725,309 - MCAODC_19400 0.79 -0.6
725,327 - MCAODC_19400 0.88 +0.9
725,349 + -1.3
725,349 + -0.5

Or see this region's nucleotide sequence