Strain Fitness in Escherichia coli ECRC101 around MCAODC_19380

Experiment: L-Arabinose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyecA and xerD are separated by 356 nucleotidesxerD and MCAODC_19385 are separated by 5 nucleotidesMCAODC_19385 and MCAODC_19390 are separated by 29 nucleotides MCAODC_19375: yecA - UPF0149 family protein YecA, at 721,373 to 722,038 yecA MCAODC_19380: xerD - integrase, at 722,395 to 723,396 xerD MCAODC_19385: MCAODC_19385 - DUF2511 domain-containing protein, at 723,402 to 723,749 _19385 MCAODC_19390: MCAODC_19390 - Putative transmembrane protein, at 723,779 to 724,429 _19390 Position (kb) 722 723 724Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 721.536 kb on - strand, within yecAat 721.595 kb on - strand, within yecAat 721.678 kb on - strand, within yecAat 721.855 kb on - strand, within yecAat 721.932 kb on - strand, within yecAat 722.074 kb on + strandat 722.074 kb on + strandat 722.075 kb on - strandat 722.079 kb on + strandat 722.079 kb on + strandat 722.080 kb on - strandat 722.080 kb on - strandat 722.080 kb on - strandat 722.103 kb on - strandat 722.352 kb on + strandat 722.371 kb on - strandat 722.371 kb on - strandat 722.438 kb on - strandat 722.470 kb on - strandat 722.470 kb on - strandat 722.488 kb on - strandat 722.561 kb on - strand, within xerDat 722.573 kb on - strand, within xerDat 722.631 kb on - strand, within xerDat 722.631 kb on - strand, within xerDat 722.631 kb on - strand, within xerDat 722.631 kb on - strand, within xerDat 722.879 kb on - strand, within xerDat 722.990 kb on - strand, within xerDat 722.990 kb on - strand, within xerDat 722.990 kb on - strand, within xerDat 722.994 kb on - strand, within xerDat 723.081 kb on + strand, within xerDat 723.188 kb on + strand, within xerDat 723.188 kb on + strand, within xerDat 723.189 kb on - strand, within xerDat 723.189 kb on - strand, within xerDat 723.261 kb on + strand, within xerDat 723.284 kb on + strand, within xerDat 723.285 kb on - strand, within xerDat 723.370 kb on - strandat 723.407 kb on + strandat 723.407 kb on + strandat 723.476 kb on + strand, within MCAODC_19385at 723.477 kb on - strand, within MCAODC_19385at 723.501 kb on - strand, within MCAODC_19385at 723.505 kb on - strand, within MCAODC_19385at 723.562 kb on - strand, within MCAODC_19385at 723.562 kb on - strand, within MCAODC_19385at 723.570 kb on - strand, within MCAODC_19385at 723.675 kb on - strand, within MCAODC_19385at 723.869 kb on + strand, within MCAODC_19390at 724.062 kb on - strand, within MCAODC_19390at 724.074 kb on - strand, within MCAODC_19390at 724.103 kb on - strand, within MCAODC_19390at 724.145 kb on - strand, within MCAODC_19390at 724.163 kb on - strand, within MCAODC_19390at 724.211 kb on - strand, within MCAODC_19390at 724.243 kb on + strand, within MCAODC_19390at 724.337 kb on - strand, within MCAODC_19390at 724.351 kb on - strand, within MCAODC_19390at 724.351 kb on - strand, within MCAODC_19390

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose
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721,536 - yecA MCAODC_19375 0.24 -0.0
721,595 - yecA MCAODC_19375 0.33 +2.0
721,678 - yecA MCAODC_19375 0.46 -1.1
721,855 - yecA MCAODC_19375 0.72 -0.1
721,932 - yecA MCAODC_19375 0.84 +0.6
722,074 + -0.3
722,074 + +0.4
722,075 - +0.9
722,079 + +1.4
722,079 + +0.5
722,080 - -0.8
722,080 - +1.2
722,080 - +0.6
722,103 - +0.8
722,352 + -5.5
722,371 - +2.2
722,371 - -2.1
722,438 - +0.1
722,470 - +1.2
722,470 - +0.7
722,488 - +0.5
722,561 - xerD MCAODC_19380 0.17 -0.8
722,573 - xerD MCAODC_19380 0.18 +0.9
722,631 - xerD MCAODC_19380 0.24 -0.1
722,631 - xerD MCAODC_19380 0.24 +0.2
722,631 - xerD MCAODC_19380 0.24 -0.2
722,631 - xerD MCAODC_19380 0.24 +1.6
722,879 - xerD MCAODC_19380 0.48 -1.1
722,990 - xerD MCAODC_19380 0.59 +0.1
722,990 - xerD MCAODC_19380 0.59 +1.7
722,990 - xerD MCAODC_19380 0.59 -0.2
722,994 - xerD MCAODC_19380 0.60 -0.8
723,081 + xerD MCAODC_19380 0.68 -1.6
723,188 + xerD MCAODC_19380 0.79 -3.9
723,188 + xerD MCAODC_19380 0.79 -0.6
723,189 - xerD MCAODC_19380 0.79 +0.4
723,189 - xerD MCAODC_19380 0.79 +0.4
723,261 + xerD MCAODC_19380 0.86 +0.4
723,284 + xerD MCAODC_19380 0.89 +0.2
723,285 - xerD MCAODC_19380 0.89 +1.0
723,370 - +0.6
723,407 + +0.2
723,407 + -3.4
723,476 + MCAODC_19385 0.21 -0.2
723,477 - MCAODC_19385 0.22 +0.5
723,501 - MCAODC_19385 0.28 -2.2
723,505 - MCAODC_19385 0.30 +2.1
723,562 - MCAODC_19385 0.46 +0.2
723,562 - MCAODC_19385 0.46 +0.8
723,570 - MCAODC_19385 0.48 +0.6
723,675 - MCAODC_19385 0.78 -0.7
723,869 + MCAODC_19390 0.14 -0.5
724,062 - MCAODC_19390 0.43 -0.5
724,074 - MCAODC_19390 0.45 -0.7
724,103 - MCAODC_19390 0.50 -0.2
724,145 - MCAODC_19390 0.56 +1.2
724,163 - MCAODC_19390 0.59 -1.5
724,211 - MCAODC_19390 0.66 -1.9
724,243 + MCAODC_19390 0.71 +0.2
724,337 - MCAODC_19390 0.86 +1.1
724,351 - MCAODC_19390 0.88 -0.5
724,351 - MCAODC_19390 0.88 +1.1

Or see this region's nucleotide sequence