Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yniB and hxpB are separated by 146 nucleotides hxpB and ybcI are separated by 162 nucleotides ybcI and tcyP are separated by 132 nucleotides
MCAODC_18390: yniB - Uncharacterized protein YniB, at 537,679 to 538,215
yniB
MCAODC_18395: hxpB - hexitol phosphatase HxpB, at 538,362 to 539,030
hxpB
MCAODC_18400: ybcI - metal-dependent hydrolase, at 539,193 to 539,783
ybcI
MCAODC_18405: tcyP - cystine/sulfocysteine:cation symporter, at 539,916 to 541,307
tcyP
Position (kb) 539
540 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 538.209 kb on - strand at 538.249 kb on + strand at 538.255 kb on - strand at 538.261 kb on - strand at 538.264 kb on + strand at 538.294 kb on + strand at 538.300 kb on - strand at 538.325 kb on - strand at 538.328 kb on - strand at 538.332 kb on + strand at 538.332 kb on + strand at 538.338 kb on + strand at 538.338 kb on + strand at 538.339 kb on - strand at 538.339 kb on - strand at 538.339 kb on - strand at 538.339 kb on - strand at 538.339 kb on - strand at 538.339 kb on - strand at 538.346 kb on + strand at 538.347 kb on - strand at 538.360 kb on + strand at 538.360 kb on + strand at 538.360 kb on + strand at 538.400 kb on + strand at 538.510 kb on + strand, within hxpB at 538.510 kb on + strand, within hxpB at 538.585 kb on + strand, within hxpB at 538.589 kb on - strand, within hxpB at 538.639 kb on + strand, within hxpB at 538.687 kb on + strand, within hxpB at 538.721 kb on + strand, within hxpB at 538.721 kb on + strand, within hxpB at 538.722 kb on - strand, within hxpB at 538.722 kb on - strand, within hxpB at 538.722 kb on - strand, within hxpB at 538.819 kb on + strand, within hxpB at 538.819 kb on + strand, within hxpB at 538.820 kb on - strand, within hxpB at 538.821 kb on + strand, within hxpB at 538.885 kb on + strand, within hxpB at 538.969 kb on + strand at 538.970 kb on - strand at 539.147 kb on - strand at 539.147 kb on - strand at 539.164 kb on + strand at 539.190 kb on - strand at 539.222 kb on + strand at 539.222 kb on + strand at 539.236 kb on + strand at 539.291 kb on + strand, within ybcI at 539.291 kb on + strand, within ybcI at 539.292 kb on - strand, within ybcI at 539.533 kb on + strand, within ybcI at 539.762 kb on + strand at 539.763 kb on - strand at 539.763 kb on - strand at 539.781 kb on + strand at 539.809 kb on + strand at 539.810 kb on - strand at 539.827 kb on + strand at 539.827 kb on + strand at 539.829 kb on + strand at 539.869 kb on + strand at 539.869 kb on + strand at 539.870 kb on - strand at 539.894 kb on + strand at 539.894 kb on + strand at 539.895 kb on - strand at 539.929 kb on + strand at 539.930 kb on - strand at 540.059 kb on + strand, within tcyP at 540.059 kb on + strand, within tcyP at 540.066 kb on + strand, within tcyP at 540.066 kb on + strand, within tcyP at 540.100 kb on + strand, within tcyP at 540.100 kb on + strand, within tcyP at 540.110 kb on + strand, within tcyP at 540.245 kb on + strand, within tcyP at 540.245 kb on + strand, within tcyP at 540.293 kb on - strand, within tcyP at 540.371 kb on + strand, within tcyP at 540.375 kb on + strand, within tcyP at 540.375 kb on + strand, within tcyP at 540.375 kb on + strand, within tcyP at 540.375 kb on + strand, within tcyP at 540.375 kb on + strand, within tcyP at 540.375 kb on + strand, within tcyP at 540.376 kb on - strand, within tcyP at 540.383 kb on + strand, within tcyP at 540.511 kb on + strand, within tcyP at 540.601 kb on + strand, within tcyP at 540.601 kb on + strand, within tcyP at 540.671 kb on + strand, within tcyP
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 538,209 - -1.1 538,249 + +0.0 538,255 - +3.5 538,261 - +0.2 538,264 + -1.3 538,294 + +0.1 538,300 - +1.5 538,325 - -0.5 538,328 - +0.8 538,332 + +0.3 538,332 + +0.5 538,338 + -0.2 538,338 + -1.0 538,339 - -0.0 538,339 - +0.5 538,339 - -3.2 538,339 - +0.2 538,339 - +1.4 538,339 - +1.5 538,346 + -2.6 538,347 - -0.4 538,360 + -0.2 538,360 + +1.1 538,360 + +0.5 538,400 + -0.3 538,510 + hxpB MCAODC_18395 0.22 -1.8 538,510 + hxpB MCAODC_18395 0.22 -1.0 538,585 + hxpB MCAODC_18395 0.33 -0.4 538,589 - hxpB MCAODC_18395 0.34 +0.3 538,639 + hxpB MCAODC_18395 0.41 -0.9 538,687 + hxpB MCAODC_18395 0.49 -0.8 538,721 + hxpB MCAODC_18395 0.54 -1.9 538,721 + hxpB MCAODC_18395 0.54 -1.4 538,722 - hxpB MCAODC_18395 0.54 -1.6 538,722 - hxpB MCAODC_18395 0.54 +0.2 538,722 - hxpB MCAODC_18395 0.54 -1.4 538,819 + hxpB MCAODC_18395 0.68 +0.4 538,819 + hxpB MCAODC_18395 0.68 -1.5 538,820 - hxpB MCAODC_18395 0.68 +0.2 538,821 + hxpB MCAODC_18395 0.69 -1.1 538,885 + hxpB MCAODC_18395 0.78 -1.3 538,969 + +0.1 538,970 - -1.5 539,147 - +1.1 539,147 - -1.6 539,164 + -0.6 539,190 - -0.4 539,222 + +2.3 539,222 + +2.3 539,236 + -0.3 539,291 + ybcI MCAODC_18400 0.17 -0.6 539,291 + ybcI MCAODC_18400 0.17 -0.6 539,292 - ybcI MCAODC_18400 0.17 +0.8 539,533 + ybcI MCAODC_18400 0.58 +1.2 539,762 + +0.8 539,763 - +0.6 539,763 - -2.6 539,781 + +1.8 539,809 + -0.4 539,810 - +0.8 539,827 + +1.4 539,827 + -3.0 539,829 + -0.7 539,869 + -0.3 539,869 + -3.3 539,870 - +1.1 539,894 + +1.4 539,894 + -0.3 539,895 - +1.8 539,929 + +0.4 539,930 - -4.3 540,059 + tcyP MCAODC_18405 0.10 +1.9 540,059 + tcyP MCAODC_18405 0.10 +0.2 540,066 + tcyP MCAODC_18405 0.11 +0.4 540,066 + tcyP MCAODC_18405 0.11 +0.1 540,100 + tcyP MCAODC_18405 0.13 +1.6 540,100 + tcyP MCAODC_18405 0.13 +1.7 540,110 + tcyP MCAODC_18405 0.14 -1.4 540,245 + tcyP MCAODC_18405 0.24 +0.3 540,245 + tcyP MCAODC_18405 0.24 +1.4 540,293 - tcyP MCAODC_18405 0.27 -0.1 540,371 + tcyP MCAODC_18405 0.33 -0.0 540,375 + tcyP MCAODC_18405 0.33 +2.2 540,375 + tcyP MCAODC_18405 0.33 +0.2 540,375 + tcyP MCAODC_18405 0.33 +0.6 540,375 + tcyP MCAODC_18405 0.33 -2.7 540,375 + tcyP MCAODC_18405 0.33 +1.0 540,375 + tcyP MCAODC_18405 0.33 +0.3 540,376 - tcyP MCAODC_18405 0.33 -3.2 540,383 + tcyP MCAODC_18405 0.34 +0.9 540,511 + tcyP MCAODC_18405 0.43 +0.9 540,601 + tcyP MCAODC_18405 0.49 +0.3 540,601 + tcyP MCAODC_18405 0.49 -1.1 540,671 + tcyP MCAODC_18405 0.54 -2.6
Or see this region's nucleotide sequence