Strain Fitness in Escherichia coli ECRC101 around MCAODC_16720

Experiment: L-Arabinose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntfimA and fimC are separated by 41 nucleotidesfimC and fimA are separated by 360 nucleotides MCAODC_16715: fimA - type 1 fimbrial major subunit FimA, at 247,673 to 250,324 fimA MCAODC_16720: fimC - fimbrial chaperone protein FimC, at 250,366 to 251,076 fimC MCAODC_16725: fimA - type 1 fimbrial major subunit FimA, at 251,437 to 252,000 fimA Position (kb) 250 251 252Strain fitness (log2 ratio) -2 -1 0 1 2at 249.510 kb on + strand, within fimAat 249.510 kb on + strand, within fimAat 249.969 kb on - strand, within fimAat 250.108 kb on - strandat 250.249 kb on + strandat 250.271 kb on + strandat 250.274 kb on + strandat 250.558 kb on - strand, within fimCat 251.195 kb on - strandat 251.401 kb on + strandat 251.419 kb on - strandat 251.588 kb on - strand, within fimAat 251.599 kb on - strand, within fimAat 251.686 kb on - strand, within fimAat 251.686 kb on - strand, within fimAat 251.749 kb on - strand, within fimAat 252.026 kb on - strandat 252.051 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose
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249,510 + fimA MCAODC_16715 0.69 +1.3
249,510 + fimA MCAODC_16715 0.69 +0.5
249,969 - fimA MCAODC_16715 0.87 +1.1
250,108 - -1.8
250,249 + -0.2
250,271 + -0.3
250,274 + +0.5
250,558 - fimC MCAODC_16720 0.27 +0.5
251,195 - +0.1
251,401 + -0.9
251,419 - +1.8
251,588 - fimA MCAODC_16725 0.27 +0.9
251,599 - fimA MCAODC_16725 0.29 -1.5
251,686 - fimA MCAODC_16725 0.44 -0.0
251,686 - fimA MCAODC_16725 0.44 +0.6
251,749 - fimA MCAODC_16725 0.55 +0.9
252,026 - +0.3
252,051 - +1.9

Or see this region's nucleotide sequence