Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt fdnG and fdnH are separated by 12 nucleotides fdnH and fdnI overlap by 8 nucleotides fdnI and yddM are separated by 227 nucleotides
MCAODC_16555: fdnG - formate dehydrogenase-N subunit alpha, at 206,396 to 209,443
fdnG
MCAODC_16560: fdnH - formate dehydrogenase N subunit beta, at 209,456 to 210,340
fdnH
MCAODC_16565: fdnI - formate dehydrogenase-N subunit gamma, at 210,333 to 210,986
fdnI
MCAODC_16570: yddM - HigA family addiction module antitoxin, at 211,214 to 211,498
yddM
Position (kb) 209
210
211 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 208.473 kb on + strand, within fdnG at 208.478 kb on - strand, within fdnG at 208.511 kb on + strand, within fdnG at 208.511 kb on + strand, within fdnG at 208.585 kb on + strand, within fdnG at 208.586 kb on - strand, within fdnG at 208.610 kb on + strand, within fdnG at 208.684 kb on + strand, within fdnG at 208.730 kb on + strand, within fdnG at 208.870 kb on + strand, within fdnG at 208.973 kb on - strand, within fdnG at 209.194 kb on + strand at 209.280 kb on + strand at 209.281 kb on - strand at 209.351 kb on + strand at 209.351 kb on + strand at 209.352 kb on - strand at 209.353 kb on + strand at 209.353 kb on + strand at 209.353 kb on + strand at 209.353 kb on + strand at 209.354 kb on - strand at 209.354 kb on - strand at 209.355 kb on + strand at 209.355 kb on + strand at 209.355 kb on + strand at 209.355 kb on + strand at 209.355 kb on + strand at 209.356 kb on - strand at 209.359 kb on + strand at 209.531 kb on + strand at 209.651 kb on + strand, within fdnH at 209.701 kb on + strand, within fdnH at 209.816 kb on + strand, within fdnH at 209.929 kb on + strand, within fdnH at 209.929 kb on + strand, within fdnH at 209.929 kb on + strand, within fdnH at 209.929 kb on + strand, within fdnH at 209.930 kb on - strand, within fdnH at 209.930 kb on - strand, within fdnH at 210.095 kb on + strand, within fdnH at 210.096 kb on - strand, within fdnH at 210.127 kb on + strand, within fdnH at 210.127 kb on + strand, within fdnH at 210.131 kb on + strand, within fdnH at 210.131 kb on + strand, within fdnH at 210.281 kb on + strand at 210.587 kb on + strand, within fdnI at 210.601 kb on + strand, within fdnI at 210.635 kb on + strand, within fdnI at 210.635 kb on + strand, within fdnI at 210.653 kb on + strand, within fdnI at 210.731 kb on + strand, within fdnI at 210.839 kb on + strand, within fdnI at 210.839 kb on + strand, within fdnI at 210.839 kb on + strand, within fdnI at 210.839 kb on + strand, within fdnI at 210.840 kb on - strand, within fdnI at 210.840 kb on - strand, within fdnI at 210.843 kb on + strand, within fdnI at 210.843 kb on + strand, within fdnI at 210.843 kb on + strand, within fdnI at 210.843 kb on + strand, within fdnI at 210.843 kb on + strand, within fdnI at 210.843 kb on + strand, within fdnI at 210.984 kb on + strand at 210.984 kb on + strand at 210.984 kb on + strand at 211.043 kb on + strand at 211.044 kb on - strand at 211.052 kb on + strand at 211.053 kb on - strand at 211.053 kb on - strand at 211.336 kb on + strand, within yddM
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 208,473 + fdnG MCAODC_16555 0.68 +0.1 208,478 - fdnG MCAODC_16555 0.68 +1.0 208,511 + fdnG MCAODC_16555 0.69 -0.7 208,511 + fdnG MCAODC_16555 0.69 +1.6 208,585 + fdnG MCAODC_16555 0.72 -2.8 208,586 - fdnG MCAODC_16555 0.72 +0.2 208,610 + fdnG MCAODC_16555 0.73 -0.4 208,684 + fdnG MCAODC_16555 0.75 -1.0 208,730 + fdnG MCAODC_16555 0.77 +1.0 208,870 + fdnG MCAODC_16555 0.81 -2.7 208,973 - fdnG MCAODC_16555 0.85 +0.2 209,194 + -1.9 209,280 + -3.1 209,281 - +1.2 209,351 + -0.6 209,351 + -1.1 209,352 - -0.7 209,353 + +0.7 209,353 + -2.7 209,353 + -0.3 209,353 + -0.9 209,354 - -0.2 209,354 - +0.3 209,355 + -0.3 209,355 + +0.2 209,355 + +0.5 209,355 + +1.7 209,355 + +1.4 209,356 - +0.1 209,359 + +0.1 209,531 + -1.8 209,651 + fdnH MCAODC_16560 0.22 +0.7 209,701 + fdnH MCAODC_16560 0.28 -3.7 209,816 + fdnH MCAODC_16560 0.41 +0.7 209,929 + fdnH MCAODC_16560 0.53 +0.1 209,929 + fdnH MCAODC_16560 0.53 +1.3 209,929 + fdnH MCAODC_16560 0.53 -0.0 209,929 + fdnH MCAODC_16560 0.53 -0.8 209,930 - fdnH MCAODC_16560 0.54 +0.6 209,930 - fdnH MCAODC_16560 0.54 -4.2 210,095 + fdnH MCAODC_16560 0.72 -2.0 210,096 - fdnH MCAODC_16560 0.72 -0.4 210,127 + fdnH MCAODC_16560 0.76 +0.6 210,127 + fdnH MCAODC_16560 0.76 +1.0 210,131 + fdnH MCAODC_16560 0.76 -0.3 210,131 + fdnH MCAODC_16560 0.76 +0.7 210,281 + -0.2 210,587 + fdnI MCAODC_16565 0.39 -0.7 210,601 + fdnI MCAODC_16565 0.41 +1.1 210,635 + fdnI MCAODC_16565 0.46 -2.6 210,635 + fdnI MCAODC_16565 0.46 +1.3 210,653 + fdnI MCAODC_16565 0.49 +0.1 210,731 + fdnI MCAODC_16565 0.61 +0.7 210,839 + fdnI MCAODC_16565 0.77 +0.4 210,839 + fdnI MCAODC_16565 0.77 -1.0 210,839 + fdnI MCAODC_16565 0.77 +0.8 210,839 + fdnI MCAODC_16565 0.77 -1.3 210,840 - fdnI MCAODC_16565 0.78 -1.0 210,840 - fdnI MCAODC_16565 0.78 -1.1 210,843 + fdnI MCAODC_16565 0.78 -1.9 210,843 + fdnI MCAODC_16565 0.78 +1.3 210,843 + fdnI MCAODC_16565 0.78 -1.5 210,843 + fdnI MCAODC_16565 0.78 +0.0 210,843 + fdnI MCAODC_16565 0.78 +0.1 210,843 + fdnI MCAODC_16565 0.78 +1.4 210,984 + -0.6 210,984 + -2.6 210,984 + -0.3 211,043 + +0.8 211,044 - -0.0 211,052 + +0.7 211,053 - -0.0 211,053 - -0.4 211,336 + yddM MCAODC_16570 0.43 -2.5
Or see this region's nucleotide sequence