Strain Fitness in Escherichia coli ECRC101 around MCAODC_16185

Experiment: L-Arabinose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMCAODC_16175 and ynbA are separated by 170 nucleotidesynbA and ynbB overlap by 1 nucleotidesynbB and ynbC are separated by 15 nucleotides MCAODC_16175: MCAODC_16175 - DUF2773 domain-containing protein, at 128,540 to 130,846 _16175 MCAODC_16180: ynbA - Inner membrane protein YnbA, at 131,017 to 131,622 ynbA MCAODC_16185: ynbB - Uncharacterized protein YnbB, at 131,622 to 132,518 ynbB MCAODC_16190: ynbC - Uncharacterized protein YnbC, at 132,534 to 134,291 ynbC Position (kb) 131 132 133Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 130.678 kb on + strandat 130.701 kb on + strandat 130.767 kb on + strandat 130.848 kb on + strandat 131.083 kb on - strand, within ynbAat 131.137 kb on - strand, within ynbAat 131.440 kb on + strand, within ynbAat 131.509 kb on + strand, within ynbAat 131.731 kb on + strand, within ynbBat 131.995 kb on + strand, within ynbBat 132.319 kb on + strand, within ynbBat 132.350 kb on + strand, within ynbBat 132.526 kb on + strandat 132.617 kb on - strandat 132.646 kb on + strandat 132.713 kb on + strand, within ynbCat 132.915 kb on + strand, within ynbCat 132.915 kb on + strand, within ynbCat 132.916 kb on - strand, within ynbCat 132.959 kb on + strand, within ynbCat 133.041 kb on + strand, within ynbCat 133.094 kb on + strand, within ynbCat 133.130 kb on + strand, within ynbCat 133.164 kb on - strand, within ynbCat 133.224 kb on + strand, within ynbCat 133.225 kb on - strand, within ynbCat 133.225 kb on - strand, within ynbCat 133.225 kb on - strand, within ynbCat 133.262 kb on + strand, within ynbCat 133.267 kb on + strand, within ynbCat 133.267 kb on + strand, within ynbCat 133.271 kb on + strand, within ynbCat 133.271 kb on + strand, within ynbCat 133.308 kb on + strand, within ynbCat 133.381 kb on - strand, within ynbC

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose
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130,678 + -0.6
130,701 + +1.3
130,767 + +2.2
130,848 + -1.0
131,083 - ynbA MCAODC_16180 0.11 +1.3
131,137 - ynbA MCAODC_16180 0.20 -0.5
131,440 + ynbA MCAODC_16180 0.70 +0.1
131,509 + ynbA MCAODC_16180 0.81 -1.2
131,731 + ynbB MCAODC_16185 0.12 -1.2
131,995 + ynbB MCAODC_16185 0.42 +0.9
132,319 + ynbB MCAODC_16185 0.78 +0.7
132,350 + ynbB MCAODC_16185 0.81 -1.0
132,526 + +1.0
132,617 - +0.8
132,646 + -1.6
132,713 + ynbC MCAODC_16190 0.10 +0.4
132,915 + ynbC MCAODC_16190 0.22 +1.1
132,915 + ynbC MCAODC_16190 0.22 -3.9
132,916 - ynbC MCAODC_16190 0.22 -2.3
132,959 + ynbC MCAODC_16190 0.24 +1.4
133,041 + ynbC MCAODC_16190 0.29 +1.4
133,094 + ynbC MCAODC_16190 0.32 -1.3
133,130 + ynbC MCAODC_16190 0.34 +0.7
133,164 - ynbC MCAODC_16190 0.36 -0.6
133,224 + ynbC MCAODC_16190 0.39 -0.1
133,225 - ynbC MCAODC_16190 0.39 +1.0
133,225 - ynbC MCAODC_16190 0.39 +0.9
133,225 - ynbC MCAODC_16190 0.39 +0.2
133,262 + ynbC MCAODC_16190 0.41 -0.8
133,267 + ynbC MCAODC_16190 0.42 -1.7
133,267 + ynbC MCAODC_16190 0.42 -2.0
133,271 + ynbC MCAODC_16190 0.42 +0.7
133,271 + ynbC MCAODC_16190 0.42 +0.3
133,308 + ynbC MCAODC_16190 0.44 -0.3
133,381 - ynbC MCAODC_16190 0.48 -2.2

Or see this region's nucleotide sequence