Strain Fitness in Escherichia coli ECRC101 around MCAODC_16180

Experiment: L-Arabinose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMCAODC_16175 and ynbA are separated by 170 nucleotidesynbA and ynbB overlap by 1 nucleotidesynbB and ynbC are separated by 15 nucleotides MCAODC_16175: MCAODC_16175 - DUF2773 domain-containing protein, at 128,540 to 130,846 _16175 MCAODC_16180: ynbA - Inner membrane protein YnbA, at 131,017 to 131,622 ynbA MCAODC_16185: ynbB - Uncharacterized protein YnbB, at 131,622 to 132,518 ynbB MCAODC_16190: ynbC - Uncharacterized protein YnbC, at 132,534 to 134,291 ynbC Position (kb) 131 132Strain fitness (log2 ratio) -2 -1 0 1 2at 130.296 kb on + strand, within MCAODC_16175at 130.354 kb on + strand, within MCAODC_16175at 130.527 kb on + strand, within MCAODC_16175at 130.527 kb on + strand, within MCAODC_16175at 130.528 kb on - strand, within MCAODC_16175at 130.551 kb on + strand, within MCAODC_16175at 130.678 kb on + strandat 130.701 kb on + strandat 130.767 kb on + strandat 130.848 kb on + strandat 131.083 kb on - strand, within ynbAat 131.137 kb on - strand, within ynbAat 131.440 kb on + strand, within ynbAat 131.509 kb on + strand, within ynbAat 131.731 kb on + strand, within ynbBat 131.995 kb on + strand, within ynbBat 132.319 kb on + strand, within ynbBat 132.350 kb on + strand, within ynbBat 132.526 kb on + strandat 132.617 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose
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130,296 + MCAODC_16175 0.76 -1.8
130,354 + MCAODC_16175 0.79 -1.2
130,527 + MCAODC_16175 0.86 +1.6
130,527 + MCAODC_16175 0.86 -0.1
130,528 - MCAODC_16175 0.86 +0.6
130,551 + MCAODC_16175 0.87 +0.5
130,678 + -0.6
130,701 + +1.3
130,767 + +2.2
130,848 + -1.0
131,083 - ynbA MCAODC_16180 0.11 +1.3
131,137 - ynbA MCAODC_16180 0.20 -0.5
131,440 + ynbA MCAODC_16180 0.70 +0.1
131,509 + ynbA MCAODC_16180 0.81 -1.2
131,731 + ynbB MCAODC_16185 0.12 -1.2
131,995 + ynbB MCAODC_16185 0.42 +0.9
132,319 + ynbB MCAODC_16185 0.78 +0.7
132,350 + ynbB MCAODC_16185 0.81 -1.0
132,526 + +1.0
132,617 - +0.8

Or see this region's nucleotide sequence