Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ynaI and ynaJ are separated by 243 nucleotides ynaJ and uspE are separated by 49 nucleotides uspE and fnr are separated by 151 nucleotides
MCAODC_16015: ynaI - low conductance mechanosensitive channel YnaI, at 94,237 to 95,268
ynaI
MCAODC_16020: ynaJ - Uncharacterized protein YnaJ, at 95,512 to 95,769
ynaJ
MCAODC_16025: uspE - universal stress protein UspE, at 95,819 to 96,769
uspE
MCAODC_16030: fnr - fumarate/nitrate reduction transcriptional regulator Fnr, at 96,921 to 97,673
fnr
Position (kb) 95
96
97 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 95.081 kb on + strand, within ynaI at 95.506 kb on + strand at 95.506 kb on + strand at 95.506 kb on + strand at 95.506 kb on + strand at 95.517 kb on + strand at 95.624 kb on + strand, within ynaJ at 95.624 kb on + strand, within ynaJ at 95.668 kb on + strand, within ynaJ at 95.700 kb on + strand, within ynaJ at 95.700 kb on + strand, within ynaJ at 95.700 kb on + strand, within ynaJ at 95.767 kb on + strand at 95.807 kb on - strand at 95.859 kb on + strand at 95.860 kb on - strand at 95.987 kb on + strand, within uspE at 95.988 kb on - strand, within uspE at 96.119 kb on - strand, within uspE at 96.121 kb on - strand, within uspE at 96.263 kb on - strand, within uspE at 96.263 kb on - strand, within uspE at 96.308 kb on - strand, within uspE at 96.760 kb on - strand at 96.764 kb on - strand at 96.769 kb on + strand at 96.783 kb on - strand at 96.806 kb on + strand at 96.811 kb on - strand at 96.986 kb on - strand at 97.067 kb on - strand, within fnr at 97.067 kb on - strand, within fnr at 97.312 kb on - strand, within fnr at 97.393 kb on - strand, within fnr at 97.393 kb on - strand, within fnr at 97.439 kb on - strand, within fnr at 97.439 kb on - strand, within fnr at 97.439 kb on - strand, within fnr at 97.479 kb on - strand, within fnr at 97.545 kb on - strand, within fnr at 97.545 kb on - strand, within fnr at 97.622 kb on + strand at 97.673 kb on + strand at 97.674 kb on - strand at 97.674 kb on - strand at 97.691 kb on - strand at 97.732 kb on + strand at 97.733 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 95,081 + ynaI MCAODC_16015 0.82 -0.3 95,506 + +0.2 95,506 + -1.4 95,506 + -1.1 95,506 + +0.1 95,517 + -0.1 95,624 + ynaJ MCAODC_16020 0.43 -0.5 95,624 + ynaJ MCAODC_16020 0.43 -0.0 95,668 + ynaJ MCAODC_16020 0.60 +0.3 95,700 + ynaJ MCAODC_16020 0.73 +1.3 95,700 + ynaJ MCAODC_16020 0.73 +1.0 95,700 + ynaJ MCAODC_16020 0.73 +0.9 95,767 + -0.4 95,807 - +0.3 95,859 + +0.4 95,860 - -0.9 95,987 + uspE MCAODC_16025 0.18 -1.2 95,988 - uspE MCAODC_16025 0.18 +0.1 96,119 - uspE MCAODC_16025 0.32 +0.4 96,121 - uspE MCAODC_16025 0.32 -1.2 96,263 - uspE MCAODC_16025 0.47 +1.2 96,263 - uspE MCAODC_16025 0.47 -0.6 96,308 - uspE MCAODC_16025 0.51 +0.5 96,760 - +1.7 96,764 - -3.4 96,769 + -1.8 96,783 - -1.9 96,806 + -0.4 96,811 - +1.0 96,986 - -0.4 97,067 - fnr MCAODC_16030 0.19 -1.2 97,067 - fnr MCAODC_16030 0.19 +1.0 97,312 - fnr MCAODC_16030 0.52 -2.4 97,393 - fnr MCAODC_16030 0.63 +0.4 97,393 - fnr MCAODC_16030 0.63 -0.4 97,439 - fnr MCAODC_16030 0.69 +1.7 97,439 - fnr MCAODC_16030 0.69 +1.3 97,439 - fnr MCAODC_16030 0.69 +1.2 97,479 - fnr MCAODC_16030 0.74 -1.6 97,545 - fnr MCAODC_16030 0.83 +0.3 97,545 - fnr MCAODC_16030 0.83 +0.4 97,622 + -0.2 97,673 + +0.6 97,674 - -0.6 97,674 - +0.1 97,691 - +1.1 97,732 + +0.0 97,733 - +1.0
Or see this region's nucleotide sequence