Strain Fitness in Escherichia coli ECRC101 around MCAODC_15785

Experiment: L-Arabinose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nttolC and araJ are separated by 8 nucleotidesaraJ and sapF are separated by 51 nucleotidessapF and sapD are separated by 1 nucleotides MCAODC_15780: tolC - multidrug transporter, at 47,152 to 48,525 tolC MCAODC_15785: araJ - Bcr/CflA family drug resistance efflux transporter, at 48,534 to 49,697 araJ MCAODC_15790: sapF - peptide ABC transporter ATP-binding protein SapF, at 49,749 to 50,555 sapF MCAODC_15795: sapD - peptide ABC transporter ATP-binding protein SapD, at 50,557 to 51,549 sapD Position (kb) 48 49 50Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 47.559 kb on - strand, within tolCat 47.618 kb on + strand, within tolCat 47.821 kb on + strand, within tolCat 47.930 kb on + strand, within tolCat 47.930 kb on + strand, within tolCat 47.930 kb on + strand, within tolCat 47.931 kb on - strand, within tolCat 47.931 kb on - strand, within tolCat 48.000 kb on + strand, within tolCat 48.000 kb on + strand, within tolCat 48.001 kb on - strand, within tolCat 48.138 kb on + strand, within tolCat 48.326 kb on - strand, within tolCat 48.330 kb on + strand, within tolCat 48.391 kb on + strandat 48.391 kb on + strandat 48.534 kb on - strandat 48.610 kb on - strandat 48.670 kb on + strand, within araJat 48.739 kb on + strand, within araJat 48.772 kb on + strand, within araJat 48.780 kb on - strand, within araJat 48.815 kb on + strand, within araJat 48.815 kb on + strand, within araJat 48.842 kb on + strand, within araJat 48.887 kb on + strand, within araJat 48.903 kb on + strand, within araJat 49.031 kb on - strand, within araJat 49.076 kb on + strand, within araJat 49.206 kb on + strand, within araJat 49.206 kb on + strand, within araJat 49.340 kb on + strand, within araJat 49.447 kb on + strand, within araJat 49.502 kb on + strand, within araJat 49.513 kb on + strand, within araJat 49.577 kb on + strand, within araJat 49.619 kb on - strandat 49.647 kb on + strandat 49.649 kb on + strandat 49.649 kb on + strandat 49.649 kb on + strandat 49.649 kb on + strandat 49.650 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose
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47,559 - tolC MCAODC_15780 0.30 -0.7
47,618 + tolC MCAODC_15780 0.34 +0.6
47,821 + tolC MCAODC_15780 0.49 +1.2
47,930 + tolC MCAODC_15780 0.57 +0.2
47,930 + tolC MCAODC_15780 0.57 -0.6
47,930 + tolC MCAODC_15780 0.57 +0.0
47,931 - tolC MCAODC_15780 0.57 -1.4
47,931 - tolC MCAODC_15780 0.57 -1.7
48,000 + tolC MCAODC_15780 0.62 -2.4
48,000 + tolC MCAODC_15780 0.62 +0.4
48,001 - tolC MCAODC_15780 0.62 +0.7
48,138 + tolC MCAODC_15780 0.72 +0.5
48,326 - tolC MCAODC_15780 0.85 +1.8
48,330 + tolC MCAODC_15780 0.86 +0.1
48,391 + -2.7
48,391 + +1.1
48,534 - +1.4
48,610 - -1.3
48,670 + araJ MCAODC_15785 0.12 -1.6
48,739 + araJ MCAODC_15785 0.18 -1.7
48,772 + araJ MCAODC_15785 0.20 -2.9
48,780 - araJ MCAODC_15785 0.21 +1.1
48,815 + araJ MCAODC_15785 0.24 -1.8
48,815 + araJ MCAODC_15785 0.24 +0.4
48,842 + araJ MCAODC_15785 0.26 -0.1
48,887 + araJ MCAODC_15785 0.30 +1.5
48,903 + araJ MCAODC_15785 0.32 -0.3
49,031 - araJ MCAODC_15785 0.43 -3.3
49,076 + araJ MCAODC_15785 0.47 +2.0
49,206 + araJ MCAODC_15785 0.58 -1.7
49,206 + araJ MCAODC_15785 0.58 +0.5
49,340 + araJ MCAODC_15785 0.69 -0.7
49,447 + araJ MCAODC_15785 0.78 -0.4
49,502 + araJ MCAODC_15785 0.83 +1.0
49,513 + araJ MCAODC_15785 0.84 -0.5
49,577 + araJ MCAODC_15785 0.90 +0.1
49,619 - +0.6
49,647 + -0.1
49,649 + -0.3
49,649 + -0.7
49,649 + +1.1
49,649 + +0.3
49,650 - -3.2

Or see this region's nucleotide sequence