Strain Fitness in Escherichia coli ECRC101 around MCAODC_15765

Experiment: L-Arabinose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntfabI_F203V and acrR are separated by 477 nucleotidesacrR and acrA are separated by 148 nucleotides MCAODC_15760: fabI_F203V - enoyl-[acyl-carrier-protein] reductase FabI, at 40,938 to 41,726 _F203V MCAODC_15765: acrR - TetR family transcriptional regulator, at 42,204 to 42,770 acrR MCAODC_15770: acrA - efflux transporter periplasmic adaptor subunit, at 42,919 to 44,040 acrA Position (kb) 42 43Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 41.817 kb on - strandat 41.817 kb on - strandat 41.817 kb on - strandat 41.817 kb on - strandat 41.819 kb on - strandat 41.843 kb on + strandat 41.844 kb on - strandat 41.844 kb on - strandat 41.844 kb on - strandat 41.877 kb on + strandat 41.877 kb on + strandat 41.898 kb on + strandat 41.899 kb on - strandat 41.933 kb on + strandat 41.934 kb on - strandat 41.965 kb on + strandat 42.015 kb on - strandat 42.097 kb on + strandat 42.098 kb on - strandat 42.111 kb on - strandat 42.302 kb on + strand, within acrRat 42.346 kb on + strand, within acrRat 42.354 kb on + strand, within acrRat 42.377 kb on + strand, within acrRat 42.413 kb on + strand, within acrRat 42.473 kb on + strand, within acrRat 42.545 kb on + strand, within acrRat 42.599 kb on + strand, within acrRat 42.599 kb on + strand, within acrRat 42.662 kb on + strand, within acrRat 42.662 kb on + strand, within acrRat 42.684 kb on + strand, within acrRat 42.926 kb on - strandat 42.927 kb on + strandat 42.929 kb on + strandat 42.959 kb on + strandat 43.133 kb on + strand, within acrAat 43.137 kb on + strand, within acrAat 43.137 kb on + strand, within acrAat 43.229 kb on + strand, within acrAat 43.532 kb on - strand, within acrAat 43.532 kb on - strand, within acrAat 43.532 kb on - strand, within acrAat 43.563 kb on - strand, within acrAat 43.566 kb on - strand, within acrAat 43.566 kb on - strand, within acrAat 43.566 kb on - strand, within acrAat 43.576 kb on - strand, within acrAat 43.643 kb on - strand, within acrAat 43.742 kb on + strand, within acrA

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose
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41,817 - +0.7
41,817 - +1.3
41,817 - +0.8
41,817 - -0.3
41,819 - -1.8
41,843 + -0.3
41,844 - -1.2
41,844 - -0.7
41,844 - +0.4
41,877 + +0.1
41,877 + -0.1
41,898 + +1.3
41,899 - +1.2
41,933 + -2.3
41,934 - -0.2
41,965 + -0.7
42,015 - +0.0
42,097 + +1.3
42,098 - +0.5
42,111 - -1.6
42,302 + acrR MCAODC_15765 0.17 +0.3
42,346 + acrR MCAODC_15765 0.25 +1.9
42,354 + acrR MCAODC_15765 0.26 +0.1
42,377 + acrR MCAODC_15765 0.31 +0.4
42,413 + acrR MCAODC_15765 0.37 -0.2
42,473 + acrR MCAODC_15765 0.47 -0.4
42,545 + acrR MCAODC_15765 0.60 +1.5
42,599 + acrR MCAODC_15765 0.70 -1.9
42,599 + acrR MCAODC_15765 0.70 -0.3
42,662 + acrR MCAODC_15765 0.81 +0.8
42,662 + acrR MCAODC_15765 0.81 +0.1
42,684 + acrR MCAODC_15765 0.85 +0.6
42,926 - +2.7
42,927 + +2.2
42,929 + -3.0
42,959 + -0.0
43,133 + acrA MCAODC_15770 0.19 +0.5
43,137 + acrA MCAODC_15770 0.19 -0.3
43,137 + acrA MCAODC_15770 0.19 -0.2
43,229 + acrA MCAODC_15770 0.28 -0.2
43,532 - acrA MCAODC_15770 0.55 +1.0
43,532 - acrA MCAODC_15770 0.55 +1.4
43,532 - acrA MCAODC_15770 0.55 +0.8
43,563 - acrA MCAODC_15770 0.57 -0.3
43,566 - acrA MCAODC_15770 0.58 +0.9
43,566 - acrA MCAODC_15770 0.58 -1.3
43,566 - acrA MCAODC_15770 0.58 -2.7
43,576 - acrA MCAODC_15770 0.59 +0.6
43,643 - acrA MCAODC_15770 0.65 -0.2
43,742 + acrA MCAODC_15770 0.73 -2.1

Or see this region's nucleotide sequence