Strain Fitness in Escherichia coli ECRC101 around MCAODC_14080

Experiment: L-Arabinose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMCAODC_14070 and tnp-IS3 are separated by 2 nucleotidestnp-IS3 and tnp-IS3 overlap by 1 nucleotidestnp-IS3 and MCAODC_14085 are separated by 76 nucleotidesMCAODC_14085 and yfaU are separated by 67 nucleotides MCAODC_14070: MCAODC_14070 - MFS transporter, at 2,757,055 to 2,757,612 _14070 MCAODC_14075: tnp-IS3 - IS3 family transposase, at 2,757,615 to 2,758,502 tnp-IS3 MCAODC_14080: tnp-IS3 - IS3 family transposase, at 2,758,502 to 2,758,828 tnp-IS3 MCAODC_14085: MCAODC_14085 - MFS transporter, at 2,758,905 to 2,759,657 _14085 MCAODC_14090: yfaU - 2-keto-3-deoxy-L-rhamnonate aldolase, at 2,759,725 to 2,760,477 yfaU Position (kb) 2758 2759Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 2757.513 kb on - strand, within MCAODC_14070at 2758.855 kb on + strandat 2759.076 kb on - strand, within MCAODC_14085at 2759.249 kb on + strand, within MCAODC_14085at 2759.324 kb on + strand, within MCAODC_14085at 2759.324 kb on + strand, within MCAODC_14085at 2759.325 kb on - strand, within MCAODC_14085at 2759.325 kb on - strand, within MCAODC_14085at 2759.394 kb on - strand, within MCAODC_14085at 2759.473 kb on + strand, within MCAODC_14085at 2759.501 kb on + strand, within MCAODC_14085at 2759.502 kb on - strand, within MCAODC_14085at 2759.536 kb on + strand, within MCAODC_14085at 2759.655 kb on + strandat 2759.655 kb on + strandat 2759.655 kb on + strandat 2759.655 kb on + strandat 2759.655 kb on + strandat 2759.655 kb on + strandat 2759.656 kb on - strandat 2759.659 kb on + strandat 2759.659 kb on + strandat 2759.659 kb on + strandat 2759.659 kb on + strandat 2759.660 kb on - strandat 2759.660 kb on - strandat 2759.688 kb on + strandat 2759.701 kb on - strandat 2759.712 kb on - strandat 2759.761 kb on + strandat 2759.761 kb on + strandat 2759.761 kb on + strandat 2759.761 kb on + strandat 2759.762 kb on - strandat 2759.762 kb on - strandat 2759.791 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose
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2,757,513 - MCAODC_14070 0.82 +2.1
2,758,855 + -1.2
2,759,076 - MCAODC_14085 0.23 +1.3
2,759,249 + MCAODC_14085 0.46 +0.6
2,759,324 + MCAODC_14085 0.56 -2.2
2,759,324 + MCAODC_14085 0.56 +0.3
2,759,325 - MCAODC_14085 0.56 +0.5
2,759,325 - MCAODC_14085 0.56 -0.3
2,759,394 - MCAODC_14085 0.65 +0.3
2,759,473 + MCAODC_14085 0.75 -0.0
2,759,501 + MCAODC_14085 0.79 +1.4
2,759,502 - MCAODC_14085 0.79 +0.3
2,759,536 + MCAODC_14085 0.84 +1.0
2,759,655 + -1.4
2,759,655 + -0.7
2,759,655 + +0.7
2,759,655 + -1.0
2,759,655 + +0.4
2,759,655 + -0.5
2,759,656 - -0.5
2,759,659 + +0.0
2,759,659 + -0.7
2,759,659 + +1.3
2,759,659 + +0.6
2,759,660 - +1.0
2,759,660 - -3.8
2,759,688 + +0.6
2,759,701 - +1.4
2,759,712 - -0.2
2,759,761 + +0.4
2,759,761 + +0.6
2,759,761 + -0.1
2,759,761 + -1.2
2,759,762 - +0.3
2,759,762 - -0.5
2,759,791 + +0.1

Or see this region's nucleotide sequence