Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MCAODC_11575 and MCAODC_11580 are separated by 4 nucleotides MCAODC_11580 and rrrD are separated by 42 nucleotides rrrD and insE are separated by 75 nucleotides insE and tnpB overlap by 4 nucleotides tnpB and MCAODC_11600 are separated by 49 nucleotides
MCAODC_11575: MCAODC_11575 - holin, at 2,300,886 to 2,301,101
_11575
MCAODC_11580: MCAODC_11580 - YdfR family protein, at 2,301,106 to 2,301,438
_11580
MCAODC_11585: rrrD - lysozyme, at 2,301,481 to 2,301,711
rrrD
MCAODC_11590: insE - Transposase InsE and inactivated derivatives, at 2,301,787 to 2,302,167
insE
MCAODC_11595: tnpB - IS66 family insertion sequence element accessory protein TnpB, at 2,302,164 to 2,302,511
tnpB
MCAODC_11600: MCAODC_11600 - Transposase C of IS166 homeodomain, at 2,302,561 to 2,303,205
_11600
MCAODC_11605: tnp-IS3 - IS3 family transposase, at 2,303,012 to 2,303,899
tnp-IS3
Position (kb)
2301
2302
2303 Strain fitness (log2 ratio)
-1
0
1 at 2301.441 kb on + strand at 2301.441 kb on + strand at 2301.441 kb on + strand at 2301.441 kb on + strand at 2301.703 kb on - strand at 2302.945 kb on + strand, within MCAODC_11600
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 2,301,441 + +0.3 2,301,441 + -0.6 2,301,441 + -1.0 2,301,441 + -0.2 2,301,703 - +0.7 2,302,945 + MCAODC_11600 0.60 -1.1
Or see this region's nucleotide sequence