Strain Fitness in Escherichia coli ECRC101 around MCAODC_11110

Experiment: L-Arabinose

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Arabinose
2,212,669	+	hycC	MCAODC_11105	0.46	+1.8
2,212,669	+	hycC	MCAODC_11105	0.46	-1.0
2,212,669	+	hycC	MCAODC_11105	0.46	+0.6
2,212,669	+	hycC	MCAODC_11105	0.46	+0.9
2,212,669	+	hycC	MCAODC_11105	0.46	+0.4
2,212,669	+	hycC	MCAODC_11105	0.46	+1.6
2,212,669	+	hycC	MCAODC_11105	0.46	-0.2
2,212,670	-	hycC	MCAODC_11105	0.46	+0.6
2,212,670	-	hycC	MCAODC_11105	0.46	+0.8
2,212,670	-	hycC	MCAODC_11105	0.46	-0.6
2,212,670	-	hycC	MCAODC_11105	0.46	+1.1
2,212,673	-	hycC	MCAODC_11105	0.46	+0.2
2,212,683	+	hycC	MCAODC_11105	0.47	-0.5
2,212,683	+	hycC	MCAODC_11105	0.47	+1.6
2,212,684	-	hycC	MCAODC_11105	0.47	-0.6
2,212,803	-	hycC	MCAODC_11105	0.54	-1.3
2,212,803	-	hycC	MCAODC_11105	0.54	-1.4
2,212,819	+	hycC	MCAODC_11105	0.54	-0.1
2,212,819	+	hycC	MCAODC_11105	0.54	-0.4
2,212,819	+	hycC	MCAODC_11105	0.54	+1.0
2,212,820	-	hycC	MCAODC_11105	0.55	-1.1
2,212,903	+	hycC	MCAODC_11105	0.59	+1.0
2,212,904	-	hycC	MCAODC_11105	0.59	+0.9
2,212,936	+	hycC	MCAODC_11105	0.61	-2.3
2,212,936	+	hycC	MCAODC_11105	0.61	+0.9
2,212,936	+	hycC	MCAODC_11105	0.61	-0.4
2,212,937	-	hycC	MCAODC_11105	0.61	-2.7
2,212,937	-	hycC	MCAODC_11105	0.61	+0.1
2,213,006	+	hycC	MCAODC_11105	0.65	+0.5
2,213,006	+	hycC	MCAODC_11105	0.65	-0.3
2,213,006	+	hycC	MCAODC_11105	0.65	+0.8
2,213,006	+	hycC	MCAODC_11105	0.65	+0.3
2,213,006	+	hycC	MCAODC_11105	0.65	-0.9
2,213,006	+	hycC	MCAODC_11105	0.65	+0.4
2,213,007	-	hycC	MCAODC_11105	0.65	-2.7
2,213,033	-	hycC	MCAODC_11105	0.66	-0.2
2,213,033	-	hycC	MCAODC_11105	0.66	+1.1
2,213,033	-	hycC	MCAODC_11105	0.66	+0.4
2,213,089	+	hycC	MCAODC_11105	0.69	+0.3
2,213,090	-	hycC	MCAODC_11105	0.69	+0.9
2,213,113	+	hycC	MCAODC_11105	0.71	+0.3
2,213,202	+	hycC	MCAODC_11105	0.75	-3.4
2,213,202	+	hycC	MCAODC_11105	0.75	+0.8
2,213,202	+	hycC	MCAODC_11105	0.75	-0.5
2,213,203	-	hycC	MCAODC_11105	0.75	+1.0
2,213,203	-	hycC	MCAODC_11105	0.75	-1.5
2,213,208	+	hycC	MCAODC_11105	0.76	-0.8
2,213,233	-	hycC	MCAODC_11105	0.77	+0.5
2,213,233	-	hycC	MCAODC_11105	0.77	-0.8
2,213,283	+	hycC	MCAODC_11105	0.80	-3.0
2,213,283	+	hycC	MCAODC_11105	0.80	+2.2
2,213,283	+	hycC	MCAODC_11105	0.80	-0.4
2,213,284	-	hycC	MCAODC_11105	0.80	-2.5
2,213,284	-	hycC	MCAODC_11105	0.80	+0.6
2,213,284	-	hycC	MCAODC_11105	0.80	+0.9
2,213,305	+	hycC	MCAODC_11105	0.81	-0.2
2,213,306	-	hycC	MCAODC_11105	0.81	+0.3
2,213,374	+	hycC	MCAODC_11105	0.85	+0.2
2,213,460	+	hycC	MCAODC_11105	0.90	-0.4
2,213,629	+				+0.5
2,213,629	+				-0.1
2,213,629	+				-3.1
2,213,629	+				+0.1
2,213,630	-				-0.4
2,213,630	-				-0.4
2,213,663	+				-0.6
2,213,664	-				-1.6
2,213,664	-				+0.7
2,213,664	-				+1.4
2,213,664	-				-0.1
2,213,664	-				+0.8
2,213,664	-				+0.6
2,213,664	-				-3.3
2,213,665	+				+0.9
2,213,690	+				+0.2
2,213,691	-				-0.8
2,213,691	-				-0.7
2,213,691	-				+0.2
2,213,858	-	hycD	MCAODC_11110	0.22	-0.2
2,213,951	+	hycD	MCAODC_11110	0.32	-0.1
2,213,952	-	hycD	MCAODC_11110	0.32	+0.9
2,213,952	-	hycD	MCAODC_11110	0.32	+0.4
2,213,952	-	hycD	MCAODC_11110	0.32	-0.4
2,213,956	+	hycD	MCAODC_11110	0.33	+0.7
2,213,957	-	hycD	MCAODC_11110	0.33	-2.5
2,213,957	-	hycD	MCAODC_11110	0.33	+0.2
2,214,369	+	hycD	MCAODC_11110	0.77	-0.9
2,214,369	+	hycD	MCAODC_11110	0.77	-0.1
2,214,504	+				+0.6
2,214,507	+				+0.3
2,214,507	+				-1.9
2,214,507	+				-1.6
2,214,508	-				-2.4
2,214,519	+				-0.2
2,214,520	-				+0.8
2,214,621	+				-0.4
2,214,622	-				-0.4
2,214,714	+				-0.2
2,214,714	+				-0.1
2,214,714	+				-0.6
2,214,714	+				+0.5
2,214,714	+				+0.0
2,214,715	-				+0.3
2,214,741	+				+0.9
2,214,741	+				-0.5
2,214,742	-				+0.0
2,214,745	-				+1.9
2,214,745	-				-0.5
2,214,745	-				-0.1
2,214,808	-	hycE	MCAODC_11115	0.13	+1.2
2,214,816	+	hycE	MCAODC_11115	0.13	-0.0
2,214,819	+	hycE	MCAODC_11115	0.13	-1.1
2,214,819	+	hycE	MCAODC_11115	0.13	+0.2
2,214,845	+	hycE	MCAODC_11115	0.15	-0.1
2,214,845	+	hycE	MCAODC_11115	0.15	+2.6
2,214,845	+	hycE	MCAODC_11115	0.15	-1.6
2,214,845	+	hycE	MCAODC_11115	0.15	+2.0
2,214,845	+	hycE	MCAODC_11115	0.15	+0.3
2,214,895	-	hycE	MCAODC_11115	0.18	-0.4
2,214,946	+	hycE	MCAODC_11115	0.21	+0.2
2,214,953	+	hycE	MCAODC_11115	0.21	+0.6
2,214,953	+	hycE	MCAODC_11115	0.21	+0.0
2,214,953	+	hycE	MCAODC_11115	0.21	-1.4
2,214,954	-	hycE	MCAODC_11115	0.21	-0.9
2,214,954	-	hycE	MCAODC_11115	0.21	+0.5
2,214,954	-	hycE	MCAODC_11115	0.21	-1.6
2,214,957	+	hycE	MCAODC_11115	0.21	+0.7
2,214,958	-	hycE	MCAODC_11115	0.21	+0.8
2,214,958	-	hycE	MCAODC_11115	0.21	+0.5
2,215,041	-	hycE	MCAODC_11115	0.26	-0.5
2,215,041	-	hycE	MCAODC_11115	0.26	-2.4
2,215,236	+	hycE	MCAODC_11115	0.38	+1.0
2,215,236	+	hycE	MCAODC_11115	0.38	-3.5
2,215,236	+	hycE	MCAODC_11115	0.38	-0.5
2,215,236	+	hycE	MCAODC_11115	0.38	+1.1
2,215,237	-	hycE	MCAODC_11115	0.38	+0.9
2,215,237	-	hycE	MCAODC_11115	0.38	-0.3
2,215,237	-	hycE	MCAODC_11115	0.38	-3.8
2,215,237	-	hycE	MCAODC_11115	0.38	+0.6
2,215,237	-	hycE	MCAODC_11115	0.38	-1.7
2,215,237	-	hycE	MCAODC_11115	0.38	+2.2
2,215,237	-	hycE	MCAODC_11115	0.38	-1.7
2,215,281	+	hycE	MCAODC_11115	0.40	+0.3
2,215,347	+	hycE	MCAODC_11115	0.44	-1.9
2,215,347	+	hycE	MCAODC_11115	0.44	-0.1
2,215,347	+	hycE	MCAODC_11115	0.44	-0.6
2,215,427	-	hycE	MCAODC_11115	0.49	+0.1
2,215,427	-	hycE	MCAODC_11115	0.49	+1.6
2,215,496	+	hycE	MCAODC_11115	0.53	-0.0
2,215,496	+	hycE	MCAODC_11115	0.53	-0.1
2,215,497	-	hycE	MCAODC_11115	0.53	-2.0
2,215,567	-	hycE	MCAODC_11115	0.57	+0.3
2,215,567	-	hycE	MCAODC_11115	0.57	-0.6