Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yqeJ and yqeI overlap by 4 nucleotides yqeI and MCAODC_10425 are separated by 120 nucleotides MCAODC_10425 and yqeH are separated by 81 nucleotides
MCAODC_10415: yqeJ - Uncharacterized protein YqeJ, at 2,072,609 to 2,073,088
yqeJ
MCAODC_10420: yqeI - Uncharacterized protein YqeI, at 2,073,085 to 2,073,894
yqeI
MCAODC_10425: MCAODC_10425 - hypothetical protein, at 2,074,015 to 2,074,146
_10425
MCAODC_10430: yqeH - Uncharacterized protein YqeH, at 2,074,228 to 2,074,860
yqeH
Position (kb)
2074
2075 Strain fitness (log2 ratio)
-2
-1
0
1 at 2073.298 kb on + strand, within yqeI at 2073.556 kb on + strand, within yqeI at 2073.573 kb on + strand, within yqeI at 2073.630 kb on + strand, within yqeI at 2073.631 kb on - strand, within yqeI at 2073.631 kb on - strand, within yqeI at 2073.634 kb on - strand, within yqeI at 2073.681 kb on - strand, within yqeI at 2073.682 kb on + strand, within yqeI at 2073.682 kb on + strand, within yqeI at 2073.682 kb on + strand, within yqeI at 2073.682 kb on + strand, within yqeI at 2073.683 kb on - strand, within yqeI at 2073.683 kb on - strand, within yqeI at 2073.683 kb on - strand, within yqeI at 2073.683 kb on - strand, within yqeI at 2073.691 kb on - strand, within yqeI at 2073.693 kb on + strand, within yqeI at 2073.694 kb on - strand, within yqeI at 2073.706 kb on - strand, within yqeI at 2073.706 kb on - strand, within yqeI at 2073.772 kb on + strand, within yqeI at 2073.772 kb on + strand, within yqeI at 2073.946 kb on + strand at 2073.947 kb on - strand at 2073.954 kb on + strand at 2074.139 kb on - strand at 2074.311 kb on - strand, within yqeH at 2074.377 kb on - strand, within yqeH at 2074.405 kb on + strand, within yqeH at 2074.495 kb on + strand, within yqeH at 2074.537 kb on - strand, within yqeH at 2074.747 kb on - strand, within yqeH at 2074.884 kb on - strand at 2075.097 kb on + strand at 2075.098 kb on - strand at 2075.131 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 2,073,298 + yqeI MCAODC_10420 0.26 +0.8 2,073,556 + yqeI MCAODC_10420 0.58 -1.7 2,073,573 + yqeI MCAODC_10420 0.60 +0.5 2,073,630 + yqeI MCAODC_10420 0.67 -1.9 2,073,631 - yqeI MCAODC_10420 0.67 -1.0 2,073,631 - yqeI MCAODC_10420 0.67 -0.5 2,073,634 - yqeI MCAODC_10420 0.68 -0.5 2,073,681 - yqeI MCAODC_10420 0.74 +1.1 2,073,682 + yqeI MCAODC_10420 0.74 +0.4 2,073,682 + yqeI MCAODC_10420 0.74 -0.0 2,073,682 + yqeI MCAODC_10420 0.74 +1.7 2,073,682 + yqeI MCAODC_10420 0.74 +1.4 2,073,683 - yqeI MCAODC_10420 0.74 +1.6 2,073,683 - yqeI MCAODC_10420 0.74 +1.1 2,073,683 - yqeI MCAODC_10420 0.74 -0.3 2,073,683 - yqeI MCAODC_10420 0.74 +0.6 2,073,691 - yqeI MCAODC_10420 0.75 -1.2 2,073,693 + yqeI MCAODC_10420 0.75 +0.5 2,073,694 - yqeI MCAODC_10420 0.75 +0.0 2,073,706 - yqeI MCAODC_10420 0.77 -1.0 2,073,706 - yqeI MCAODC_10420 0.77 -0.0 2,073,772 + yqeI MCAODC_10420 0.85 -2.0 2,073,772 + yqeI MCAODC_10420 0.85 +1.0 2,073,946 + +0.7 2,073,947 - -0.0 2,073,954 + +1.2 2,074,139 - +0.5 2,074,311 - yqeH MCAODC_10430 0.13 -2.1 2,074,377 - yqeH MCAODC_10430 0.24 -0.4 2,074,405 + yqeH MCAODC_10430 0.28 -1.2 2,074,495 + yqeH MCAODC_10430 0.42 -0.5 2,074,537 - yqeH MCAODC_10430 0.49 +0.8 2,074,747 - yqeH MCAODC_10430 0.82 +1.2 2,074,884 - +0.0 2,075,097 + +0.5 2,075,098 - -0.3 2,075,131 - +0.4
Or see this region's nucleotide sequence