Strain Fitness in Escherichia coli ECRC101 around MCAODC_08385

Experiment: L-Arabinose

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Arabinose
1,679,598	-	nanT	MCAODC_08375	0.82	+1.5
1,679,733	-				+0.4
1,679,778	-				+0.7
1,679,911	+				-0.7
1,679,911	+				+1.3
1,679,911	+				+0.2
1,679,911	+				+1.0
1,679,912	-				-0.7
1,679,912	-				-1.1
1,679,912	-				-0.1
1,679,912	-				+0.5
1,679,912	-				-1.1
1,679,919	+				+1.4
1,679,920	-				+0.5
1,679,920	-				+1.9
1,680,030	+	nanE	MCAODC_08380	0.17	-0.2
1,680,030	+	nanE	MCAODC_08380	0.17	-0.8
1,680,170	+	nanE	MCAODC_08380	0.37	+1.0
1,680,170	+	nanE	MCAODC_08380	0.37	+0.6
1,680,170	+	nanE	MCAODC_08380	0.37	-0.2
1,680,170	+	nanE	MCAODC_08380	0.37	+1.1
1,680,170	+	nanE	MCAODC_08380	0.37	-0.0
1,680,170	+	nanE	MCAODC_08380	0.37	-0.2
1,680,170	+	nanE	MCAODC_08380	0.37	-2.3
1,680,170	+	nanE	MCAODC_08380	0.37	+0.3
1,680,171	-	nanE	MCAODC_08380	0.38	-1.4
1,680,172	+	nanE	MCAODC_08380	0.38	-2.3
1,680,172	+	nanE	MCAODC_08380	0.38	-0.9
1,680,173	-	nanE	MCAODC_08380	0.38	-0.9
1,680,274	+	nanE	MCAODC_08380	0.52	-3.6
1,680,274	+	nanE	MCAODC_08380	0.52	-0.2
1,680,274	+	nanE	MCAODC_08380	0.52	+1.6
1,680,274	+	nanE	MCAODC_08380	0.52	-0.6
1,680,275	-	nanE	MCAODC_08380	0.53	+0.1
1,680,358	+	nanE	MCAODC_08380	0.65	+1.3
1,680,367	+	nanE	MCAODC_08380	0.66	+0.2
1,680,368	-	nanE	MCAODC_08380	0.66	+0.2
1,680,380	+	nanE	MCAODC_08380	0.68	+0.3
1,680,380	+	nanE	MCAODC_08380	0.68	+0.2
1,680,381	-	nanE	MCAODC_08380	0.68	-2.9
1,680,382	+	nanE	MCAODC_08380	0.68	+2.2
1,680,382	+	nanE	MCAODC_08380	0.68	-0.7
1,680,383	-	nanE	MCAODC_08380	0.68	+0.4
1,680,470	+	nanE	MCAODC_08380	0.81	-0.4
1,680,471	-	nanE	MCAODC_08380	0.81	+0.4
1,680,541	+				+0.8
1,680,570	-				+0.6
1,680,570	-				-0.3
1,680,597	+				-2.0
1,680,597	+				+1.1
1,680,597	+				+0.5
1,680,597	+				-0.3
1,680,597	+				-0.7
1,680,598	-				+2.1
1,680,598	-				+2.6
1,680,598	-				-0.7
1,680,630	+				+2.5
1,680,630	+				+0.8
1,680,631	-				-3.7
1,680,741	-	nanK	MCAODC_08385	0.16	+1.1
1,680,795	+	nanK	MCAODC_08385	0.22	+0.8
1,680,831	+	nanK	MCAODC_08385	0.27	+0.0
1,680,832	-	nanK	MCAODC_08385	0.27	-1.1
1,680,849	-	nanK	MCAODC_08385	0.29	+0.3
1,680,849	-	nanK	MCAODC_08385	0.29	+0.0
1,680,906	+	nanK	MCAODC_08385	0.35	+0.8
1,680,938	-	nanK	MCAODC_08385	0.39	-0.6
1,680,958	-	nanK	MCAODC_08385	0.41	-1.7
1,680,976	-	nanK	MCAODC_08385	0.43	-1.0
1,681,007	+	nanK	MCAODC_08385	0.47	+0.1
1,681,007	+	nanK	MCAODC_08385	0.47	+0.8
1,681,065	+	nanK	MCAODC_08385	0.53	-0.5
1,681,065	+	nanK	MCAODC_08385	0.53	+0.2
1,681,066	-	nanK	MCAODC_08385	0.53	-0.2
1,681,066	-	nanK	MCAODC_08385	0.53	+0.9
1,681,279	-	nanK	MCAODC_08385	0.78	+0.3
1,681,281	+	nanK	MCAODC_08385	0.78	-0.2
1,681,433	+				-1.8
1,681,433	+				-0.0
1,681,433	+				-0.1
1,681,434	-				-0.8
1,681,486	+				+0.2
1,681,486	+				+0.6
1,681,486	+				+0.5
1,681,487	-				+1.0
1,681,487	-				+0.6
1,681,487	-				+0.2
1,681,510	+				-0.6
1,681,510	+				+0.7
1,681,510	+				-2.2
1,681,546	+	nanQ	MCAODC_08390	0.16	+0.3
1,681,601	+	nanQ	MCAODC_08390	0.28	-0.3
1,681,626	-	nanQ	MCAODC_08390	0.34	-0.3
1,681,672	-	nanQ	MCAODC_08390	0.43	+0.5
1,681,672	-	nanQ	MCAODC_08390	0.43	+0.8
1,681,691	-	nanQ	MCAODC_08390	0.48	+1.1
1,681,694	-	nanQ	MCAODC_08390	0.48	+1.5
1,681,770	+	nanQ	MCAODC_08390	0.65	-1.3
1,681,814	-	nanQ	MCAODC_08390	0.74	+0.3
1,681,814	-	nanQ	MCAODC_08390	0.74	+0.7
1,681,893	-				-0.7
1,681,893	-				-0.6
1,681,914	-				+0.0
1,681,914	-				+0.5
1,681,924	+				-1.0
1,681,932	+				-3.8
1,681,939	+				-1.4
1,681,939	+				+0.4
1,681,940	-				-0.7
1,681,940	-				+0.1
1,681,940	-				+0.2
1,681,949	+				-1.4
1,682,006	-				-0.8
1,682,006	-				+1.1
1,682,007	+				+0.3
1,682,019	-				+0.1
1,682,070	-				+0.3
1,682,080	+				+0.2
1,682,080	+				+0.2
1,682,080	+				-0.6
1,682,081	-				+0.1
1,682,081	-				+2.5
1,682,081	-				+0.9
1,682,081	-				-0.7
1,682,081	-				-2.5
1,682,081	-				-2.4
1,682,104	+	yhcG	MCAODC_08395	0.10	+0.7
1,682,125	-	yhcG	MCAODC_08395	0.12	+0.7
1,682,125	-	yhcG	MCAODC_08395	0.12	-0.2
1,682,125	-	yhcG	MCAODC_08395	0.12	+0.7
1,682,211	+	yhcG	MCAODC_08395	0.21	+0.6
1,682,221	-	yhcG	MCAODC_08395	0.22	-0.7
1,682,224	+	yhcG	MCAODC_08395	0.22	-1.3
1,682,224	+	yhcG	MCAODC_08395	0.22	+1.7
1,682,224	+	yhcG	MCAODC_08395	0.22	-0.2
1,682,224	+	yhcG	MCAODC_08395	0.22	+0.1
1,682,224	+	yhcG	MCAODC_08395	0.22	+0.5
1,682,224	+	yhcG	MCAODC_08395	0.22	+0.6
1,682,224	+	yhcG	MCAODC_08395	0.22	-0.4
1,682,224	+	yhcG	MCAODC_08395	0.22	+0.1
1,682,224	+	yhcG	MCAODC_08395	0.22	+0.3
1,682,224	+	yhcG	MCAODC_08395	0.22	+0.5
1,682,224	+	yhcG	MCAODC_08395	0.22	-2.7
1,682,224	+	yhcG	MCAODC_08395	0.22	+0.1
1,682,225	-	yhcG	MCAODC_08395	0.22	+0.1
1,682,225	-	yhcG	MCAODC_08395	0.22	-0.3
1,682,225	-	yhcG	MCAODC_08395	0.22	+0.1
1,682,225	-	yhcG	MCAODC_08395	0.22	+0.7
1,682,225	-	yhcG	MCAODC_08395	0.22	+0.8
1,682,225	-	yhcG	MCAODC_08395	0.22	-1.2
1,682,245	+	yhcG	MCAODC_08395	0.24	-1.5
1,682,268	-	yhcG	MCAODC_08395	0.26	+1.3
1,682,268	-	yhcG	MCAODC_08395	0.26	-0.4
1,682,292	-	yhcG	MCAODC_08395	0.28	-0.3
1,682,292	-	yhcG	MCAODC_08395	0.28	-0.4
1,682,445	+	yhcG	MCAODC_08395	0.43	-2.9
1,682,445	+	yhcG	MCAODC_08395	0.43	+0.2
1,682,445	+	yhcG	MCAODC_08395	0.43	+0.7
1,682,446	-	yhcG	MCAODC_08395	0.43	-0.6