Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt fmt and def are separated by 14 nucleotides def and dprA are separated by 129 nucleotides
MCAODC_08055: fmt - methionyl-tRNA formyltransferase, at 1,616,022 to 1,616,969
fmt
MCAODC_08060: def - peptide deformylase, at 1,616,984 to 1,617,493
def
MCAODC_08065: dprA - DNA-protecting protein DprA, at 1,617,623 to 1,618,747
dprA
Position (kb)
1616
1617
1618 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1616.007 kb on + strand at 1616.008 kb on - strand at 1616.021 kb on - strand at 1616.980 kb on - strand at 1616.986 kb on - strand at 1617.032 kb on - strand at 1617.032 kb on - strand at 1617.530 kb on - strand at 1617.530 kb on - strand at 1617.539 kb on - strand at 1617.595 kb on + strand at 1617.596 kb on - strand at 1617.605 kb on + strand at 1617.606 kb on - strand at 1617.618 kb on + strand at 1617.619 kb on - strand at 1617.619 kb on - strand at 1617.632 kb on - strand at 1617.658 kb on + strand at 1617.658 kb on + strand at 1617.672 kb on - strand at 1617.682 kb on + strand at 1617.682 kb on + strand at 1617.683 kb on - strand at 1617.691 kb on + strand at 1617.692 kb on - strand at 1617.692 kb on - strand at 1617.693 kb on + strand at 1617.693 kb on + strand at 1617.694 kb on - strand at 1617.694 kb on - strand at 1617.694 kb on - strand at 1617.694 kb on - strand at 1617.721 kb on + strand at 1617.721 kb on + strand at 1617.721 kb on + strand at 1617.735 kb on + strand at 1617.735 kb on + strand at 1617.735 kb on + strand at 1617.735 kb on + strand at 1617.735 kb on + strand at 1617.735 kb on + strand at 1617.736 kb on - strand, within dprA at 1617.736 kb on - strand, within dprA at 1617.736 kb on - strand, within dprA at 1617.755 kb on - strand, within dprA at 1617.755 kb on - strand, within dprA at 1617.755 kb on - strand, within dprA at 1617.843 kb on + strand, within dprA at 1617.844 kb on - strand, within dprA at 1618.005 kb on + strand, within dprA at 1618.006 kb on - strand, within dprA at 1618.042 kb on + strand, within dprA at 1618.043 kb on - strand, within dprA at 1618.043 kb on - strand, within dprA at 1618.075 kb on - strand, within dprA at 1618.081 kb on + strand, within dprA at 1618.081 kb on + strand, within dprA at 1618.093 kb on - strand, within dprA at 1618.119 kb on + strand, within dprA at 1618.119 kb on + strand, within dprA at 1618.135 kb on + strand, within dprA at 1618.135 kb on + strand, within dprA at 1618.135 kb on + strand, within dprA at 1618.136 kb on - strand, within dprA at 1618.136 kb on - strand, within dprA at 1618.136 kb on - strand, within dprA at 1618.139 kb on - strand, within dprA at 1618.139 kb on - strand, within dprA at 1618.239 kb on - strand, within dprA at 1618.239 kb on - strand, within dprA at 1618.265 kb on - strand, within dprA at 1618.275 kb on + strand, within dprA at 1618.275 kb on + strand, within dprA at 1618.275 kb on + strand, within dprA at 1618.276 kb on - strand, within dprA at 1618.279 kb on + strand, within dprA at 1618.279 kb on + strand, within dprA at 1618.279 kb on + strand, within dprA at 1618.279 kb on + strand, within dprA at 1618.280 kb on - strand, within dprA at 1618.287 kb on + strand, within dprA at 1618.287 kb on + strand, within dprA at 1618.287 kb on + strand, within dprA at 1618.288 kb on - strand, within dprA at 1618.383 kb on + strand, within dprA at 1618.416 kb on + strand, within dprA at 1618.419 kb on + strand, within dprA at 1618.420 kb on - strand, within dprA
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 1,616,007 + -0.5 1,616,008 - +0.0 1,616,021 - -1.1 1,616,980 - +1.2 1,616,986 - -0.3 1,617,032 - -0.4 1,617,032 - -1.4 1,617,530 - +0.4 1,617,530 - +0.9 1,617,539 - -0.4 1,617,595 + -1.7 1,617,596 - -2.0 1,617,605 + +1.1 1,617,606 - -0.1 1,617,618 + +0.9 1,617,619 - -0.6 1,617,619 - +0.1 1,617,632 - +1.8 1,617,658 + -0.8 1,617,658 + -3.7 1,617,672 - +1.1 1,617,682 + -0.3 1,617,682 + +0.6 1,617,683 - +1.7 1,617,691 + -0.3 1,617,692 - -0.6 1,617,692 - -0.7 1,617,693 + -3.3 1,617,693 + -0.4 1,617,694 - -1.4 1,617,694 - -1.1 1,617,694 - +0.2 1,617,694 - -1.4 1,617,721 + +0.1 1,617,721 + +0.3 1,617,721 + -2.1 1,617,735 + -2.8 1,617,735 + +0.4 1,617,735 + +0.6 1,617,735 + -1.0 1,617,735 + -2.9 1,617,735 + -0.2 1,617,736 - dprA MCAODC_08065 0.10 +0.7 1,617,736 - dprA MCAODC_08065 0.10 -0.4 1,617,736 - dprA MCAODC_08065 0.10 +0.8 1,617,755 - dprA MCAODC_08065 0.12 +0.5 1,617,755 - dprA MCAODC_08065 0.12 +0.3 1,617,755 - dprA MCAODC_08065 0.12 -0.7 1,617,843 + dprA MCAODC_08065 0.20 +0.6 1,617,844 - dprA MCAODC_08065 0.20 +0.6 1,618,005 + dprA MCAODC_08065 0.34 +1.0 1,618,006 - dprA MCAODC_08065 0.34 +0.8 1,618,042 + dprA MCAODC_08065 0.37 +1.0 1,618,043 - dprA MCAODC_08065 0.37 -0.5 1,618,043 - dprA MCAODC_08065 0.37 +1.3 1,618,075 - dprA MCAODC_08065 0.40 -1.0 1,618,081 + dprA MCAODC_08065 0.41 -1.9 1,618,081 + dprA MCAODC_08065 0.41 +0.4 1,618,093 - dprA MCAODC_08065 0.42 +0.4 1,618,119 + dprA MCAODC_08065 0.44 -0.3 1,618,119 + dprA MCAODC_08065 0.44 +0.8 1,618,135 + dprA MCAODC_08065 0.46 +0.9 1,618,135 + dprA MCAODC_08065 0.46 +0.4 1,618,135 + dprA MCAODC_08065 0.46 +0.5 1,618,136 - dprA MCAODC_08065 0.46 +1.7 1,618,136 - dprA MCAODC_08065 0.46 +0.4 1,618,136 - dprA MCAODC_08065 0.46 -3.3 1,618,139 - dprA MCAODC_08065 0.46 -0.1 1,618,139 - dprA MCAODC_08065 0.46 +1.6 1,618,239 - dprA MCAODC_08065 0.55 -0.2 1,618,239 - dprA MCAODC_08065 0.55 -0.2 1,618,265 - dprA MCAODC_08065 0.57 -0.7 1,618,275 + dprA MCAODC_08065 0.58 +0.2 1,618,275 + dprA MCAODC_08065 0.58 -1.8 1,618,275 + dprA MCAODC_08065 0.58 +0.1 1,618,276 - dprA MCAODC_08065 0.58 -0.8 1,618,279 + dprA MCAODC_08065 0.58 -0.7 1,618,279 + dprA MCAODC_08065 0.58 +0.6 1,618,279 + dprA MCAODC_08065 0.58 +0.7 1,618,279 + dprA MCAODC_08065 0.58 +0.4 1,618,280 - dprA MCAODC_08065 0.58 -3.3 1,618,287 + dprA MCAODC_08065 0.59 +0.3 1,618,287 + dprA MCAODC_08065 0.59 -0.2 1,618,287 + dprA MCAODC_08065 0.59 +0.9 1,618,288 - dprA MCAODC_08065 0.59 +0.1 1,618,383 + dprA MCAODC_08065 0.68 +0.5 1,618,416 + dprA MCAODC_08065 0.70 +0.2 1,618,419 + dprA MCAODC_08065 0.71 -1.0 1,618,420 - dprA MCAODC_08065 0.71 +0.3
Or see this region's nucleotide sequence