Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yhiM and MCAODC_06975 are separated by 383 nucleotides MCAODC_06975 and yhiJ are separated by 261 nucleotides
MCAODC_06970: yhiM - Inner membrane protein YhiM, at 1,415,823 to 1,416,875
yhiM
MCAODC_06975: MCAODC_06975 - DUF4049 domain-containing protein, at 1,417,259 to 1,418,869
_06975
MCAODC_06980: yhiJ - Uncharacterized protein YhiJ, at 1,419,131 to 1,420,753
yhiJ
Position (kb)
1417
1418
1419 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3
4 at 1416.267 kb on + strand, within yhiM at 1416.267 kb on + strand, within yhiM at 1416.268 kb on - strand, within yhiM at 1416.300 kb on + strand, within yhiM at 1416.300 kb on + strand, within yhiM at 1416.301 kb on - strand, within yhiM at 1416.316 kb on + strand, within yhiM at 1416.327 kb on + strand, within yhiM at 1416.327 kb on + strand, within yhiM at 1416.327 kb on + strand, within yhiM at 1416.328 kb on - strand, within yhiM at 1416.338 kb on + strand, within yhiM at 1416.338 kb on + strand, within yhiM at 1416.338 kb on + strand, within yhiM at 1416.342 kb on + strand, within yhiM at 1416.342 kb on + strand, within yhiM at 1416.343 kb on - strand, within yhiM at 1416.350 kb on + strand, within yhiM at 1416.351 kb on - strand, within yhiM at 1416.351 kb on - strand, within yhiM at 1416.353 kb on + strand, within yhiM at 1416.353 kb on + strand, within yhiM at 1416.381 kb on + strand, within yhiM at 1416.408 kb on - strand, within yhiM at 1416.414 kb on + strand, within yhiM at 1416.424 kb on + strand, within yhiM at 1416.424 kb on + strand, within yhiM at 1416.425 kb on - strand, within yhiM at 1416.514 kb on - strand, within yhiM at 1416.514 kb on - strand, within yhiM at 1416.530 kb on + strand, within yhiM at 1416.530 kb on + strand, within yhiM at 1416.531 kb on - strand, within yhiM at 1416.531 kb on - strand, within yhiM at 1416.531 kb on - strand, within yhiM at 1416.620 kb on + strand, within yhiM at 1416.620 kb on + strand, within yhiM at 1416.701 kb on + strand, within yhiM at 1416.710 kb on + strand, within yhiM at 1416.710 kb on + strand, within yhiM at 1416.865 kb on + strand at 1416.866 kb on - strand at 1416.867 kb on + strand at 1416.868 kb on - strand at 1416.868 kb on - strand at 1416.868 kb on - strand at 1416.954 kb on + strand at 1416.974 kb on + strand at 1416.980 kb on - strand at 1416.980 kb on - strand at 1417.088 kb on + strand at 1417.161 kb on + strand at 1417.212 kb on + strand at 1417.282 kb on + strand at 1417.470 kb on + strand, within MCAODC_06975 at 1417.471 kb on - strand, within MCAODC_06975 at 1417.531 kb on + strand, within MCAODC_06975 at 1417.583 kb on - strand, within MCAODC_06975 at 1417.823 kb on + strand, within MCAODC_06975 at 1417.963 kb on + strand, within MCAODC_06975 at 1417.966 kb on - strand, within MCAODC_06975 at 1418.077 kb on + strand, within MCAODC_06975 at 1418.165 kb on - strand, within MCAODC_06975 at 1418.198 kb on - strand, within MCAODC_06975 at 1418.201 kb on + strand, within MCAODC_06975 at 1418.202 kb on - strand, within MCAODC_06975 at 1418.360 kb on + strand, within MCAODC_06975 at 1418.506 kb on + strand, within MCAODC_06975 at 1418.524 kb on - strand, within MCAODC_06975 at 1418.585 kb on - strand, within MCAODC_06975 at 1418.594 kb on - strand, within MCAODC_06975 at 1418.615 kb on + strand, within MCAODC_06975 at 1418.624 kb on + strand, within MCAODC_06975 at 1418.830 kb on - strand at 1418.911 kb on + strand at 1418.988 kb on + strand at 1419.011 kb on - strand at 1419.071 kb on + strand at 1419.095 kb on + strand at 1419.099 kb on + strand at 1419.116 kb on + strand at 1419.117 kb on - strand at 1419.157 kb on + strand at 1419.167 kb on - strand at 1419.191 kb on - strand at 1419.191 kb on - strand at 1419.264 kb on + strand at 1419.265 kb on - strand at 1419.343 kb on + strand, within yhiJ at 1419.862 kb on - strand, within yhiJ
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 1,416,267 + yhiM MCAODC_06970 0.42 -3.0 1,416,267 + yhiM MCAODC_06970 0.42 -1.8 1,416,268 - yhiM MCAODC_06970 0.42 -0.1 1,416,300 + yhiM MCAODC_06970 0.45 -0.9 1,416,300 + yhiM MCAODC_06970 0.45 +3.3 1,416,301 - yhiM MCAODC_06970 0.45 -0.0 1,416,316 + yhiM MCAODC_06970 0.47 +0.5 1,416,327 + yhiM MCAODC_06970 0.48 +1.2 1,416,327 + yhiM MCAODC_06970 0.48 +0.7 1,416,327 + yhiM MCAODC_06970 0.48 +0.0 1,416,328 - yhiM MCAODC_06970 0.48 +1.7 1,416,338 + yhiM MCAODC_06970 0.49 -0.9 1,416,338 + yhiM MCAODC_06970 0.49 +1.2 1,416,338 + yhiM MCAODC_06970 0.49 +1.0 1,416,342 + yhiM MCAODC_06970 0.49 +0.8 1,416,342 + yhiM MCAODC_06970 0.49 +1.8 1,416,343 - yhiM MCAODC_06970 0.49 +2.2 1,416,350 + yhiM MCAODC_06970 0.50 -0.2 1,416,351 - yhiM MCAODC_06970 0.50 -0.6 1,416,351 - yhiM MCAODC_06970 0.50 -1.5 1,416,353 + yhiM MCAODC_06970 0.50 -1.9 1,416,353 + yhiM MCAODC_06970 0.50 +0.4 1,416,381 + yhiM MCAODC_06970 0.53 +0.2 1,416,408 - yhiM MCAODC_06970 0.56 -0.3 1,416,414 + yhiM MCAODC_06970 0.56 +0.2 1,416,424 + yhiM MCAODC_06970 0.57 +0.4 1,416,424 + yhiM MCAODC_06970 0.57 -0.0 1,416,425 - yhiM MCAODC_06970 0.57 +0.0 1,416,514 - yhiM MCAODC_06970 0.66 +0.0 1,416,514 - yhiM MCAODC_06970 0.66 +1.0 1,416,530 + yhiM MCAODC_06970 0.67 -0.3 1,416,530 + yhiM MCAODC_06970 0.67 +0.8 1,416,531 - yhiM MCAODC_06970 0.67 -1.2 1,416,531 - yhiM MCAODC_06970 0.67 +0.4 1,416,531 - yhiM MCAODC_06970 0.67 -3.3 1,416,620 + yhiM MCAODC_06970 0.76 +0.2 1,416,620 + yhiM MCAODC_06970 0.76 -0.8 1,416,701 + yhiM MCAODC_06970 0.83 -0.3 1,416,710 + yhiM MCAODC_06970 0.84 +0.9 1,416,710 + yhiM MCAODC_06970 0.84 +0.5 1,416,865 + +0.4 1,416,866 - -0.5 1,416,867 + -0.2 1,416,868 - +1.1 1,416,868 - -0.1 1,416,868 - +0.1 1,416,954 + +1.1 1,416,974 + +0.7 1,416,980 - +0.0 1,416,980 - -0.7 1,417,088 + -2.4 1,417,161 + -1.4 1,417,212 + +0.8 1,417,282 + -2.8 1,417,470 + MCAODC_06975 0.13 -0.7 1,417,471 - MCAODC_06975 0.13 +3.9 1,417,531 + MCAODC_06975 0.17 -0.6 1,417,583 - MCAODC_06975 0.20 -0.7 1,417,823 + MCAODC_06975 0.35 +1.2 1,417,963 + MCAODC_06975 0.44 +0.4 1,417,966 - MCAODC_06975 0.44 -0.4 1,418,077 + MCAODC_06975 0.51 -1.3 1,418,165 - MCAODC_06975 0.56 -0.4 1,418,198 - MCAODC_06975 0.58 +0.7 1,418,201 + MCAODC_06975 0.58 -1.3 1,418,202 - MCAODC_06975 0.59 +0.6 1,418,360 + MCAODC_06975 0.68 +1.1 1,418,506 + MCAODC_06975 0.77 +0.7 1,418,524 - MCAODC_06975 0.79 -0.6 1,418,585 - MCAODC_06975 0.82 -0.4 1,418,594 - MCAODC_06975 0.83 -0.4 1,418,615 + MCAODC_06975 0.84 -1.3 1,418,624 + MCAODC_06975 0.85 -0.3 1,418,830 - +2.0 1,418,911 + +0.6 1,418,988 + +0.7 1,419,011 - -0.6 1,419,071 + -0.2 1,419,095 + +1.0 1,419,099 + -1.1 1,419,116 + +1.3 1,419,117 - +0.4 1,419,157 + -0.0 1,419,167 - -1.1 1,419,191 - -1.8 1,419,191 - +0.4 1,419,264 + +2.3 1,419,265 - -4.4 1,419,343 + yhiJ MCAODC_06980 0.13 -0.2 1,419,862 - yhiJ MCAODC_06980 0.45 -1.1
Or see this region's nucleotide sequence