Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yihM and yihL are separated by 7 nucleotides yihL and typA are separated by 216 nucleotides typA and glnA are separated by 372 nucleotides
MCAODC_04575: yihM - Uncharacterized protein YihM, at 928,206 to 929,186
yihM
MCAODC_04580: yihL - Uncharacterized HTH-type transcriptional regulator YihL, at 929,194 to 929,904
yihL
MCAODC_04590: typA - ribosome-dependent GTPase TypA, at 930,121 to 931,944
typA
MCAODC_04600: glnA - glutamate--ammonia ligase, at 932,317 to 933,726
glnA
Position (kb) 930
931
932 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 929.125 kb on - strand at 929.176 kb on - strand at 929.234 kb on + strand at 929.242 kb on - strand at 929.242 kb on - strand at 929.243 kb on + strand at 929.257 kb on - strand at 929.290 kb on + strand, within yihL at 929.291 kb on - strand, within yihL at 929.324 kb on + strand, within yihL at 929.324 kb on + strand, within yihL at 929.325 kb on - strand, within yihL at 929.394 kb on - strand, within yihL at 929.469 kb on + strand, within yihL at 929.469 kb on + strand, within yihL at 929.470 kb on - strand, within yihL at 929.470 kb on - strand, within yihL at 929.470 kb on - strand, within yihL at 929.470 kb on - strand, within yihL at 929.472 kb on - strand, within yihL at 929.472 kb on - strand, within yihL at 929.493 kb on + strand, within yihL at 929.494 kb on - strand, within yihL at 929.494 kb on - strand, within yihL at 929.494 kb on - strand, within yihL at 929.494 kb on - strand, within yihL at 929.679 kb on + strand, within yihL at 929.710 kb on - strand, within yihL at 929.772 kb on + strand, within yihL at 929.772 kb on + strand, within yihL at 929.773 kb on - strand, within yihL at 929.773 kb on - strand, within yihL at 929.778 kb on + strand, within yihL at 929.881 kb on + strand at 929.881 kb on + strand at 929.910 kb on - strand at 929.942 kb on + strand at 929.943 kb on - strand at 929.948 kb on + strand at 929.948 kb on + strand at 929.949 kb on - strand at 929.969 kb on + strand at 929.970 kb on - strand at 929.977 kb on + strand at 929.977 kb on + strand at 929.977 kb on + strand at 929.991 kb on + strand at 929.991 kb on + strand at 929.991 kb on + strand at 929.992 kb on - strand at 929.992 kb on - strand at 930.010 kb on + strand at 930.010 kb on + strand at 930.011 kb on - strand at 930.019 kb on - strand at 930.031 kb on - strand at 930.031 kb on - strand at 930.032 kb on + strand at 930.032 kb on + strand at 930.032 kb on + strand at 930.033 kb on - strand at 930.041 kb on + strand at 930.104 kb on - strand at 930.109 kb on + strand at 930.110 kb on - strand at 930.180 kb on + strand at 930.187 kb on - strand at 930.211 kb on + strand at 930.212 kb on - strand at 930.355 kb on - strand, within typA at 930.420 kb on + strand, within typA at 930.462 kb on + strand, within typA at 930.484 kb on + strand, within typA at 930.484 kb on + strand, within typA at 930.634 kb on + strand, within typA at 930.634 kb on + strand, within typA at 930.635 kb on - strand, within typA at 930.635 kb on - strand, within typA at 930.678 kb on + strand, within typA at 930.700 kb on + strand, within typA at 930.760 kb on - strand, within typA at 930.904 kb on + strand, within typA at 930.905 kb on - strand, within typA at 930.905 kb on - strand, within typA at 930.926 kb on - strand, within typA at 930.926 kb on - strand, within typA at 930.968 kb on - strand, within typA at 930.975 kb on + strand, within typA at 930.975 kb on + strand, within typA at 930.976 kb on - strand, within typA at 930.976 kb on - strand, within typA at 930.976 kb on - strand, within typA at 930.984 kb on + strand, within typA at 931.020 kb on + strand, within typA at 931.020 kb on + strand, within typA at 931.021 kb on - strand, within typA at 931.189 kb on - strand, within typA at 931.189 kb on - strand, within typA at 931.230 kb on + strand, within typA at 931.230 kb on + strand, within typA at 931.231 kb on - strand, within typA at 931.234 kb on - strand, within typA at 931.234 kb on - strand, within typA at 931.295 kb on + strand, within typA at 931.295 kb on + strand, within typA at 931.295 kb on + strand, within typA at 931.295 kb on + strand, within typA at 931.295 kb on + strand, within typA at 931.295 kb on + strand, within typA at 931.296 kb on - strand, within typA at 931.296 kb on - strand, within typA at 931.296 kb on - strand, within typA at 931.296 kb on - strand, within typA at 931.296 kb on - strand, within typA at 931.296 kb on - strand, within typA at 931.296 kb on - strand, within typA at 931.296 kb on - strand, within typA at 931.296 kb on - strand, within typA at 931.296 kb on - strand, within typA at 931.410 kb on + strand, within typA at 931.410 kb on + strand, within typA at 931.411 kb on - strand, within typA at 931.411 kb on - strand, within typA at 931.513 kb on + strand, within typA at 931.513 kb on + strand, within typA at 931.513 kb on + strand, within typA at 931.566 kb on + strand, within typA at 931.567 kb on - strand, within typA at 931.590 kb on - strand, within typA at 931.670 kb on - strand, within typA at 931.670 kb on - strand, within typA at 931.681 kb on + strand, within typA at 931.682 kb on - strand, within typA at 931.682 kb on - strand, within typA at 931.682 kb on - strand, within typA at 931.879 kb on + strand at 931.893 kb on + strand at 931.893 kb on + strand at 931.894 kb on - strand at 931.894 kb on - strand at 931.894 kb on - strand at 931.894 kb on - strand at 931.903 kb on + strand at 931.903 kb on + strand at 931.923 kb on + strand at 931.927 kb on - strand at 931.962 kb on + strand at 931.962 kb on + strand at 931.962 kb on + strand at 931.963 kb on - strand at 931.969 kb on - strand at 931.969 kb on - strand at 932.035 kb on + strand at 932.036 kb on - strand at 932.036 kb on - strand at 932.036 kb on - strand at 932.036 kb on - strand at 932.036 kb on - strand at 932.036 kb on - strand at 932.036 kb on - strand at 932.036 kb on - strand at 932.073 kb on - strand at 932.073 kb on - strand at 932.073 kb on - strand at 932.105 kb on - strand at 932.134 kb on - strand at 932.134 kb on - strand at 932.135 kb on + strand at 932.181 kb on + strand at 932.200 kb on + strand at 932.201 kb on - strand at 932.263 kb on + strand at 932.263 kb on + strand at 932.312 kb on - strand at 932.316 kb on + strand at 932.317 kb on - strand at 932.748 kb on + strand, within glnA
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 929,125 - -0.8 929,176 - +1.5 929,234 + +0.9 929,242 - -0.9 929,242 - +1.2 929,243 + -2.9 929,257 - +0.4 929,290 + yihL MCAODC_04580 0.14 +0.2 929,291 - yihL MCAODC_04580 0.14 -0.7 929,324 + yihL MCAODC_04580 0.18 +1.7 929,324 + yihL MCAODC_04580 0.18 -2.7 929,325 - yihL MCAODC_04580 0.18 -1.0 929,394 - yihL MCAODC_04580 0.28 +0.4 929,469 + yihL MCAODC_04580 0.39 +0.0 929,469 + yihL MCAODC_04580 0.39 +0.9 929,470 - yihL MCAODC_04580 0.39 -0.5 929,470 - yihL MCAODC_04580 0.39 +0.3 929,470 - yihL MCAODC_04580 0.39 -0.8 929,470 - yihL MCAODC_04580 0.39 -0.3 929,472 - yihL MCAODC_04580 0.39 -0.5 929,472 - yihL MCAODC_04580 0.39 +0.6 929,493 + yihL MCAODC_04580 0.42 -1.2 929,494 - yihL MCAODC_04580 0.42 +0.2 929,494 - yihL MCAODC_04580 0.42 +1.5 929,494 - yihL MCAODC_04580 0.42 +0.7 929,494 - yihL MCAODC_04580 0.42 +2.0 929,679 + yihL MCAODC_04580 0.68 +0.6 929,710 - yihL MCAODC_04580 0.73 -0.4 929,772 + yihL MCAODC_04580 0.81 +1.4 929,772 + yihL MCAODC_04580 0.81 -1.0 929,773 - yihL MCAODC_04580 0.81 -0.7 929,773 - yihL MCAODC_04580 0.81 -0.0 929,778 + yihL MCAODC_04580 0.82 +0.2 929,881 + -0.0 929,881 + +0.6 929,910 - +0.6 929,942 + -2.4 929,943 - +0.8 929,948 + -1.4 929,948 + -2.9 929,949 - -3.5 929,969 + +0.1 929,970 - +0.3 929,977 + +0.2 929,977 + -1.2 929,977 + +0.3 929,991 + +0.5 929,991 + +1.8 929,991 + +0.0 929,992 - -0.9 929,992 - +0.2 930,010 + +0.7 930,010 + +0.5 930,011 - +1.0 930,019 - +1.2 930,031 - +0.8 930,031 - -0.8 930,032 + +1.1 930,032 + +0.5 930,032 + +1.7 930,033 - +0.5 930,041 + +1.5 930,104 - -0.5 930,109 + -0.5 930,110 - +1.1 930,180 + -1.9 930,187 - -0.5 930,211 + -0.5 930,212 - -1.8 930,355 - typA MCAODC_04590 0.13 +0.0 930,420 + typA MCAODC_04590 0.16 -2.4 930,462 + typA MCAODC_04590 0.19 -1.0 930,484 + typA MCAODC_04590 0.20 +2.4 930,484 + typA MCAODC_04590 0.20 -0.0 930,634 + typA MCAODC_04590 0.28 -2.2 930,634 + typA MCAODC_04590 0.28 +0.2 930,635 - typA MCAODC_04590 0.28 +0.6 930,635 - typA MCAODC_04590 0.28 -0.3 930,678 + typA MCAODC_04590 0.31 -2.1 930,700 + typA MCAODC_04590 0.32 -0.4 930,760 - typA MCAODC_04590 0.35 -0.5 930,904 + typA MCAODC_04590 0.43 -0.8 930,905 - typA MCAODC_04590 0.43 -1.8 930,905 - typA MCAODC_04590 0.43 +1.5 930,926 - typA MCAODC_04590 0.44 -1.6 930,926 - typA MCAODC_04590 0.44 -0.2 930,968 - typA MCAODC_04590 0.46 +0.8 930,975 + typA MCAODC_04590 0.47 -3.7 930,975 + typA MCAODC_04590 0.47 -1.3 930,976 - typA MCAODC_04590 0.47 +0.1 930,976 - typA MCAODC_04590 0.47 -2.7 930,976 - typA MCAODC_04590 0.47 -1.2 930,984 + typA MCAODC_04590 0.47 +1.5 931,020 + typA MCAODC_04590 0.49 -0.8 931,020 + typA MCAODC_04590 0.49 +0.2 931,021 - typA MCAODC_04590 0.49 -1.0 931,189 - typA MCAODC_04590 0.59 +0.6 931,189 - typA MCAODC_04590 0.59 -0.6 931,230 + typA MCAODC_04590 0.61 -0.2 931,230 + typA MCAODC_04590 0.61 -3.3 931,231 - typA MCAODC_04590 0.61 -0.3 931,234 - typA MCAODC_04590 0.61 +0.8 931,234 - typA MCAODC_04590 0.61 +0.0 931,295 + typA MCAODC_04590 0.64 -0.9 931,295 + typA MCAODC_04590 0.64 +1.0 931,295 + typA MCAODC_04590 0.64 +0.8 931,295 + typA MCAODC_04590 0.64 +2.3 931,295 + typA MCAODC_04590 0.64 -1.2 931,295 + typA MCAODC_04590 0.64 +0.8 931,296 - typA MCAODC_04590 0.64 -1.1 931,296 - typA MCAODC_04590 0.64 +0.6 931,296 - typA MCAODC_04590 0.64 -0.7 931,296 - typA MCAODC_04590 0.64 -1.1 931,296 - typA MCAODC_04590 0.64 -1.0 931,296 - typA MCAODC_04590 0.64 -1.2 931,296 - typA MCAODC_04590 0.64 -4.2 931,296 - typA MCAODC_04590 0.64 -0.4 931,296 - typA MCAODC_04590 0.64 -0.1 931,296 - typA MCAODC_04590 0.64 -2.1 931,410 + typA MCAODC_04590 0.71 -1.0 931,410 + typA MCAODC_04590 0.71 -0.2 931,411 - typA MCAODC_04590 0.71 -3.0 931,411 - typA MCAODC_04590 0.71 +0.4 931,513 + typA MCAODC_04590 0.76 +0.6 931,513 + typA MCAODC_04590 0.76 -0.7 931,513 + typA MCAODC_04590 0.76 -2.8 931,566 + typA MCAODC_04590 0.79 -1.1 931,567 - typA MCAODC_04590 0.79 -0.7 931,590 - typA MCAODC_04590 0.81 -0.2 931,670 - typA MCAODC_04590 0.85 +0.6 931,670 - typA MCAODC_04590 0.85 +0.0 931,681 + typA MCAODC_04590 0.86 +0.5 931,682 - typA MCAODC_04590 0.86 -0.4 931,682 - typA MCAODC_04590 0.86 -2.7 931,682 - typA MCAODC_04590 0.86 -1.6 931,879 + -1.5 931,893 + -0.0 931,893 + +0.2 931,894 - -3.0 931,894 - -2.8 931,894 - -1.9 931,894 - +1.2 931,903 + -0.0 931,903 + -0.6 931,923 + -2.2 931,927 - -1.9 931,962 + -3.1 931,962 + -1.7 931,962 + -1.0 931,963 - -1.2 931,969 - -0.8 931,969 - -0.4 932,035 + -0.9 932,036 - -0.7 932,036 - +1.1 932,036 - -0.9 932,036 - +1.8 932,036 - +1.2 932,036 - +0.2 932,036 - -1.1 932,036 - +1.1 932,073 - +0.9 932,073 - +0.2 932,073 - +0.5 932,105 - +0.2 932,134 - +1.3 932,134 - -0.1 932,135 + -0.4 932,181 + +0.0 932,200 + -2.2 932,201 - -0.1 932,263 + -0.4 932,263 + -2.0 932,312 - -0.4 932,316 + -2.4 932,317 - -1.3 932,748 + glnA MCAODC_04600 0.31 -0.6
Or see this region's nucleotide sequence