Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yihQ and melB are separated by 45 nucleotides melB and yihO are separated by 39 nucleotides
MCAODC_04550: yihQ - sulfoquinovosidase, at 921,079 to 923,115
yihQ
MCAODC_04555: melB - MFS/sugar transport protein, at 923,161 to 924,546
melB
MCAODC_04560: yihO - Putative sulfoquinovose importer, at 924,586 to 925,989
yihO
Position (kb) 923
924
925 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 922.165 kb on + strand, within yihQ at 922.225 kb on + strand, within yihQ at 922.225 kb on + strand, within yihQ at 922.245 kb on + strand, within yihQ at 922.321 kb on + strand, within yihQ at 922.351 kb on - strand, within yihQ at 922.351 kb on - strand, within yihQ at 922.386 kb on + strand, within yihQ at 922.387 kb on - strand, within yihQ at 922.387 kb on - strand, within yihQ at 922.390 kb on + strand, within yihQ at 922.390 kb on + strand, within yihQ at 922.390 kb on + strand, within yihQ at 922.391 kb on - strand, within yihQ at 922.438 kb on - strand, within yihQ at 922.452 kb on + strand, within yihQ at 922.468 kb on + strand, within yihQ at 922.550 kb on + strand, within yihQ at 922.550 kb on + strand, within yihQ at 922.551 kb on - strand, within yihQ at 922.602 kb on + strand, within yihQ at 922.602 kb on + strand, within yihQ at 922.602 kb on + strand, within yihQ at 922.603 kb on - strand, within yihQ at 922.603 kb on - strand, within yihQ at 922.603 kb on - strand, within yihQ at 922.603 kb on - strand, within yihQ at 922.790 kb on - strand, within yihQ at 922.858 kb on + strand, within yihQ at 922.879 kb on + strand, within yihQ at 922.879 kb on + strand, within yihQ at 922.879 kb on + strand, within yihQ at 922.891 kb on + strand, within yihQ at 922.892 kb on - strand, within yihQ at 922.898 kb on - strand, within yihQ at 922.905 kb on - strand, within yihQ at 922.978 kb on - strand at 923.024 kb on + strand at 923.025 kb on - strand at 923.025 kb on - strand at 923.025 kb on - strand at 923.025 kb on - strand at 923.102 kb on + strand at 923.113 kb on + strand at 923.113 kb on + strand at 923.114 kb on - strand at 923.114 kb on - strand at 923.114 kb on - strand at 923.114 kb on - strand at 923.114 kb on - strand at 923.114 kb on - strand at 923.208 kb on + strand at 923.248 kb on - strand at 923.248 kb on - strand at 923.263 kb on - strand at 923.268 kb on + strand at 923.269 kb on - strand at 923.276 kb on - strand at 923.290 kb on + strand at 923.293 kb on - strand at 923.320 kb on + strand, within melB at 923.320 kb on + strand, within melB at 923.320 kb on + strand, within melB at 923.320 kb on + strand, within melB at 923.320 kb on + strand, within melB at 923.320 kb on + strand, within melB at 923.320 kb on + strand, within melB at 923.321 kb on - strand, within melB at 923.331 kb on + strand, within melB at 923.331 kb on + strand, within melB at 923.370 kb on + strand, within melB at 923.404 kb on - strand, within melB at 923.484 kb on + strand, within melB at 923.511 kb on + strand, within melB at 923.512 kb on - strand, within melB at 923.530 kb on - strand, within melB at 923.538 kb on + strand, within melB at 923.538 kb on + strand, within melB at 923.546 kb on - strand, within melB at 923.579 kb on - strand, within melB at 923.579 kb on - strand, within melB at 923.598 kb on + strand, within melB at 923.598 kb on + strand, within melB at 923.598 kb on + strand, within melB at 923.598 kb on + strand, within melB at 923.776 kb on - strand, within melB at 923.809 kb on + strand, within melB at 923.809 kb on + strand, within melB at 923.809 kb on + strand, within melB at 923.810 kb on - strand, within melB at 923.810 kb on - strand, within melB at 923.810 kb on - strand, within melB at 923.810 kb on - strand, within melB at 923.810 kb on - strand, within melB at 923.810 kb on - strand, within melB at 923.810 kb on - strand, within melB at 923.810 kb on - strand, within melB at 923.810 kb on - strand, within melB at 923.924 kb on + strand, within melB at 923.935 kb on - strand, within melB at 923.959 kb on + strand, within melB at 923.959 kb on + strand, within melB at 923.963 kb on - strand, within melB at 923.963 kb on - strand, within melB at 923.975 kb on + strand, within melB at 923.979 kb on + strand, within melB at 923.980 kb on - strand, within melB at 924.002 kb on - strand, within melB at 924.002 kb on - strand, within melB at 924.003 kb on + strand, within melB at 924.088 kb on + strand, within melB at 924.089 kb on - strand, within melB at 924.089 kb on - strand, within melB at 924.101 kb on + strand, within melB at 924.133 kb on + strand, within melB at 924.134 kb on - strand, within melB at 924.286 kb on + strand, within melB at 924.368 kb on - strand, within melB at 924.430 kb on + strand at 924.430 kb on + strand at 924.430 kb on + strand at 924.430 kb on + strand at 924.478 kb on + strand at 924.479 kb on - strand at 924.479 kb on - strand at 924.499 kb on + strand at 924.499 kb on + strand at 924.499 kb on + strand at 924.499 kb on + strand at 924.499 kb on + strand at 924.500 kb on - strand at 924.500 kb on - strand at 924.500 kb on - strand at 924.500 kb on - strand at 924.500 kb on - strand at 924.500 kb on - strand at 924.500 kb on - strand at 924.545 kb on - strand at 924.547 kb on + strand at 924.574 kb on + strand at 924.575 kb on - strand at 924.575 kb on - strand at 924.585 kb on + strand at 924.585 kb on + strand at 924.586 kb on - strand at 924.586 kb on - strand at 924.597 kb on + strand at 924.598 kb on - strand at 924.598 kb on - strand at 924.598 kb on - strand at 924.612 kb on - strand at 924.668 kb on + strand at 924.675 kb on + strand at 924.675 kb on + strand at 924.675 kb on + strand at 924.684 kb on + strand at 924.707 kb on - strand at 924.733 kb on + strand, within yihO at 924.733 kb on + strand, within yihO at 924.733 kb on + strand, within yihO at 924.733 kb on + strand, within yihO at 924.747 kb on + strand, within yihO at 924.852 kb on + strand, within yihO at 924.853 kb on - strand, within yihO at 924.853 kb on - strand, within yihO at 924.853 kb on - strand, within yihO at 924.858 kb on - strand, within yihO at 924.860 kb on - strand, within yihO at 924.882 kb on - strand, within yihO at 924.973 kb on + strand, within yihO at 924.974 kb on - strand, within yihO at 924.995 kb on - strand, within yihO at 925.076 kb on + strand, within yihO at 925.082 kb on + strand, within yihO at 925.082 kb on + strand, within yihO at 925.093 kb on - strand, within yihO at 925.093 kb on - strand, within yihO at 925.104 kb on + strand, within yihO at 925.104 kb on + strand, within yihO at 925.188 kb on + strand, within yihO at 925.188 kb on + strand, within yihO at 925.201 kb on + strand, within yihO at 925.223 kb on - strand, within yihO at 925.248 kb on + strand, within yihO at 925.248 kb on + strand, within yihO at 925.249 kb on - strand, within yihO at 925.258 kb on - strand, within yihO at 925.370 kb on - strand, within yihO at 925.392 kb on + strand, within yihO at 925.463 kb on + strand, within yihO at 925.464 kb on - strand, within yihO at 925.499 kb on + strand, within yihO at 925.540 kb on + strand, within yihO
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 922,165 + yihQ MCAODC_04550 0.53 +0.1 922,225 + yihQ MCAODC_04550 0.56 +0.2 922,225 + yihQ MCAODC_04550 0.56 +2.4 922,245 + yihQ MCAODC_04550 0.57 -0.0 922,321 + yihQ MCAODC_04550 0.61 +0.3 922,351 - yihQ MCAODC_04550 0.62 -1.0 922,351 - yihQ MCAODC_04550 0.62 +3.2 922,386 + yihQ MCAODC_04550 0.64 +0.2 922,387 - yihQ MCAODC_04550 0.64 -0.3 922,387 - yihQ MCAODC_04550 0.64 -0.5 922,390 + yihQ MCAODC_04550 0.64 -0.6 922,390 + yihQ MCAODC_04550 0.64 -0.3 922,390 + yihQ MCAODC_04550 0.64 -1.1 922,391 - yihQ MCAODC_04550 0.64 +0.7 922,438 - yihQ MCAODC_04550 0.67 +0.9 922,452 + yihQ MCAODC_04550 0.67 +0.4 922,468 + yihQ MCAODC_04550 0.68 +0.8 922,550 + yihQ MCAODC_04550 0.72 +1.5 922,550 + yihQ MCAODC_04550 0.72 +2.9 922,551 - yihQ MCAODC_04550 0.72 -0.4 922,602 + yihQ MCAODC_04550 0.75 -0.3 922,602 + yihQ MCAODC_04550 0.75 +2.2 922,602 + yihQ MCAODC_04550 0.75 +1.2 922,603 - yihQ MCAODC_04550 0.75 +0.3 922,603 - yihQ MCAODC_04550 0.75 +0.8 922,603 - yihQ MCAODC_04550 0.75 -1.8 922,603 - yihQ MCAODC_04550 0.75 +1.0 922,790 - yihQ MCAODC_04550 0.84 -1.2 922,858 + yihQ MCAODC_04550 0.87 -0.1 922,879 + yihQ MCAODC_04550 0.88 +0.6 922,879 + yihQ MCAODC_04550 0.88 -0.0 922,879 + yihQ MCAODC_04550 0.88 -0.6 922,891 + yihQ MCAODC_04550 0.89 -1.6 922,892 - yihQ MCAODC_04550 0.89 -0.5 922,898 - yihQ MCAODC_04550 0.89 -0.3 922,905 - yihQ MCAODC_04550 0.90 -0.9 922,978 - +0.4 923,024 + +0.1 923,025 - +0.2 923,025 - +0.7 923,025 - +0.9 923,025 - +0.9 923,102 + +1.9 923,113 + -0.3 923,113 + +0.7 923,114 - +0.2 923,114 - +1.0 923,114 - +0.9 923,114 - -0.1 923,114 - +0.1 923,114 - -0.8 923,208 + -0.6 923,248 - -0.3 923,248 - +1.2 923,263 - -0.9 923,268 + +0.2 923,269 - -1.0 923,276 - -2.1 923,290 + +1.6 923,293 - +0.6 923,320 + melB MCAODC_04555 0.11 -0.4 923,320 + melB MCAODC_04555 0.11 -0.2 923,320 + melB MCAODC_04555 0.11 -0.3 923,320 + melB MCAODC_04555 0.11 +1.5 923,320 + melB MCAODC_04555 0.11 +0.3 923,320 + melB MCAODC_04555 0.11 +0.7 923,320 + melB MCAODC_04555 0.11 -1.1 923,321 - melB MCAODC_04555 0.12 +1.4 923,331 + melB MCAODC_04555 0.12 +0.5 923,331 + melB MCAODC_04555 0.12 +0.5 923,370 + melB MCAODC_04555 0.15 +0.4 923,404 - melB MCAODC_04555 0.18 -1.3 923,484 + melB MCAODC_04555 0.23 -0.2 923,511 + melB MCAODC_04555 0.25 -1.3 923,512 - melB MCAODC_04555 0.25 +0.7 923,530 - melB MCAODC_04555 0.27 -0.2 923,538 + melB MCAODC_04555 0.27 +1.3 923,538 + melB MCAODC_04555 0.27 +0.7 923,546 - melB MCAODC_04555 0.28 +1.0 923,579 - melB MCAODC_04555 0.30 -0.6 923,579 - melB MCAODC_04555 0.30 +0.6 923,598 + melB MCAODC_04555 0.32 -0.5 923,598 + melB MCAODC_04555 0.32 -2.8 923,598 + melB MCAODC_04555 0.32 -0.0 923,598 + melB MCAODC_04555 0.32 +0.6 923,776 - melB MCAODC_04555 0.44 +0.1 923,809 + melB MCAODC_04555 0.47 -0.3 923,809 + melB MCAODC_04555 0.47 +2.7 923,809 + melB MCAODC_04555 0.47 -2.0 923,810 - melB MCAODC_04555 0.47 -1.4 923,810 - melB MCAODC_04555 0.47 +0.3 923,810 - melB MCAODC_04555 0.47 -0.3 923,810 - melB MCAODC_04555 0.47 +2.4 923,810 - melB MCAODC_04555 0.47 -1.8 923,810 - melB MCAODC_04555 0.47 +0.6 923,810 - melB MCAODC_04555 0.47 +0.0 923,810 - melB MCAODC_04555 0.47 +1.4 923,810 - melB MCAODC_04555 0.47 +0.7 923,924 + melB MCAODC_04555 0.55 +0.6 923,935 - melB MCAODC_04555 0.56 -0.8 923,959 + melB MCAODC_04555 0.58 -0.1 923,959 + melB MCAODC_04555 0.58 +1.3 923,963 - melB MCAODC_04555 0.58 +0.4 923,963 - melB MCAODC_04555 0.58 -0.9 923,975 + melB MCAODC_04555 0.59 +0.3 923,979 + melB MCAODC_04555 0.59 -0.2 923,980 - melB MCAODC_04555 0.59 +0.5 924,002 - melB MCAODC_04555 0.61 -2.2 924,002 - melB MCAODC_04555 0.61 +0.5 924,003 + melB MCAODC_04555 0.61 +1.0 924,088 + melB MCAODC_04555 0.67 +0.2 924,089 - melB MCAODC_04555 0.67 -1.2 924,089 - melB MCAODC_04555 0.67 -1.6 924,101 + melB MCAODC_04555 0.68 +0.3 924,133 + melB MCAODC_04555 0.70 +0.8 924,134 - melB MCAODC_04555 0.70 -0.8 924,286 + melB MCAODC_04555 0.81 +0.6 924,368 - melB MCAODC_04555 0.87 -1.5 924,430 + +1.5 924,430 + +0.5 924,430 + +1.7 924,430 + +1.1 924,478 + +0.4 924,479 - -1.3 924,479 - +0.4 924,499 + +0.4 924,499 + +0.2 924,499 + -0.7 924,499 + +0.8 924,499 + -0.4 924,500 - +0.1 924,500 - +0.7 924,500 - -0.1 924,500 - +0.3 924,500 - -0.3 924,500 - -0.6 924,500 - +0.4 924,545 - -1.2 924,547 + +1.1 924,574 + +0.1 924,575 - -2.0 924,575 - +1.1 924,585 + +0.4 924,585 + -2.0 924,586 - -0.3 924,586 - -0.0 924,597 + +0.3 924,598 - -1.5 924,598 - +1.9 924,598 - +0.7 924,612 - -0.2 924,668 + +1.3 924,675 + -0.1 924,675 + +0.5 924,675 + -0.3 924,684 + -0.4 924,707 - -1.2 924,733 + yihO MCAODC_04560 0.10 +0.0 924,733 + yihO MCAODC_04560 0.10 +0.1 924,733 + yihO MCAODC_04560 0.10 -0.7 924,733 + yihO MCAODC_04560 0.10 -1.5 924,747 + yihO MCAODC_04560 0.11 -0.2 924,852 + yihO MCAODC_04560 0.19 +0.1 924,853 - yihO MCAODC_04560 0.19 -1.4 924,853 - yihO MCAODC_04560 0.19 +0.4 924,853 - yihO MCAODC_04560 0.19 -0.0 924,858 - yihO MCAODC_04560 0.19 -0.1 924,860 - yihO MCAODC_04560 0.20 -0.6 924,882 - yihO MCAODC_04560 0.21 -0.6 924,973 + yihO MCAODC_04560 0.28 +0.5 924,974 - yihO MCAODC_04560 0.28 -0.0 924,995 - yihO MCAODC_04560 0.29 -0.4 925,076 + yihO MCAODC_04560 0.35 -1.9 925,082 + yihO MCAODC_04560 0.35 +0.7 925,082 + yihO MCAODC_04560 0.35 +2.1 925,093 - yihO MCAODC_04560 0.36 -0.2 925,093 - yihO MCAODC_04560 0.36 -0.1 925,104 + yihO MCAODC_04560 0.37 +0.7 925,104 + yihO MCAODC_04560 0.37 -2.3 925,188 + yihO MCAODC_04560 0.43 +0.1 925,188 + yihO MCAODC_04560 0.43 +1.6 925,201 + yihO MCAODC_04560 0.44 +0.1 925,223 - yihO MCAODC_04560 0.45 +0.3 925,248 + yihO MCAODC_04560 0.47 +0.1 925,248 + yihO MCAODC_04560 0.47 +0.1 925,249 - yihO MCAODC_04560 0.47 +0.4 925,258 - yihO MCAODC_04560 0.48 -0.2 925,370 - yihO MCAODC_04560 0.56 +0.3 925,392 + yihO MCAODC_04560 0.57 -1.9 925,463 + yihO MCAODC_04560 0.62 +0.9 925,464 - yihO MCAODC_04560 0.63 +1.7 925,499 + yihO MCAODC_04560 0.65 +0.7 925,540 + yihO MCAODC_04560 0.68 -0.3
Or see this region's nucleotide sequence