Strain Fitness in Escherichia coli ECRC101 around MCAODC_04490

Experiment: L-Arabinose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMCAODC_04485 and MCAODC_04490 are separated by 6 nucleotidesMCAODC_04490 and fabY are separated by 410 nucleotides MCAODC_04485: MCAODC_04485 - Transposase, at 908,919 to 909,833 _04485 MCAODC_04490: MCAODC_04490 - hypothetical protein, at 909,840 to 910,733 _04490 MCAODC_04495: fabY - fatty acid biosynthesis protein FabY, at 911,144 to 912,085 fabY Position (kb) 909 910 911Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 908.863 kb on - strandat 908.863 kb on - strandat 908.913 kb on + strandat 908.992 kb on - strandat 909.011 kb on + strand, within MCAODC_04485at 909.113 kb on + strand, within MCAODC_04485at 909.236 kb on + strand, within MCAODC_04485at 909.298 kb on - strand, within MCAODC_04485at 909.300 kb on - strand, within MCAODC_04485at 909.488 kb on - strand, within MCAODC_04485at 909.508 kb on + strand, within MCAODC_04485at 909.509 kb on - strand, within MCAODC_04485at 909.509 kb on - strand, within MCAODC_04485at 909.513 kb on + strand, within MCAODC_04485at 909.513 kb on + strand, within MCAODC_04485at 909.584 kb on + strand, within MCAODC_04485at 909.585 kb on - strand, within MCAODC_04485at 909.585 kb on - strand, within MCAODC_04485at 909.628 kb on - strand, within MCAODC_04485at 909.635 kb on + strand, within MCAODC_04485at 909.636 kb on - strand, within MCAODC_04485at 909.636 kb on - strand, within MCAODC_04485at 909.667 kb on - strand, within MCAODC_04485at 909.717 kb on - strand, within MCAODC_04485at 909.766 kb on - strandat 909.770 kb on + strandat 909.771 kb on - strandat 909.889 kb on + strandat 909.891 kb on + strandat 909.913 kb on - strandat 910.064 kb on + strand, within MCAODC_04490at 910.143 kb on - strand, within MCAODC_04490at 910.214 kb on - strand, within MCAODC_04490at 910.267 kb on - strand, within MCAODC_04490at 910.330 kb on - strand, within MCAODC_04490at 910.341 kb on + strand, within MCAODC_04490at 910.342 kb on - strand, within MCAODC_04490at 910.343 kb on + strand, within MCAODC_04490at 910.363 kb on + strand, within MCAODC_04490at 910.364 kb on + strand, within MCAODC_04490at 910.364 kb on + strand, within MCAODC_04490at 910.454 kb on + strand, within MCAODC_04490at 910.455 kb on - strand, within MCAODC_04490at 910.457 kb on - strand, within MCAODC_04490at 910.458 kb on + strand, within MCAODC_04490at 910.458 kb on + strand, within MCAODC_04490at 910.459 kb on - strand, within MCAODC_04490at 910.857 kb on + strandat 910.873 kb on - strandat 910.936 kb on + strandat 911.029 kb on + strandat 911.073 kb on + strandat 911.098 kb on + strandat 911.100 kb on + strandat 911.100 kb on + strandat 911.145 kb on + strandat 911.146 kb on - strandat 911.204 kb on - strandat 911.205 kb on + strandat 911.205 kb on + strandat 911.205 kb on + strandat 911.205 kb on + strandat 911.205 kb on + strandat 911.205 kb on + strandat 911.205 kb on + strandat 911.205 kb on + strandat 911.206 kb on - strandat 911.206 kb on - strandat 911.206 kb on - strandat 911.206 kb on - strandat 911.206 kb on - strandat 911.206 kb on - strandat 911.206 kb on - strandat 911.206 kb on - strandat 911.206 kb on - strandat 911.206 kb on - strandat 911.206 kb on - strandat 911.206 kb on - strandat 911.206 kb on - strandat 911.206 kb on - strandat 911.362 kb on - strand, within fabYat 911.429 kb on - strand, within fabYat 911.462 kb on + strand, within fabYat 911.482 kb on + strand, within fabYat 911.483 kb on - strand, within fabYat 911.518 kb on + strand, within fabYat 911.518 kb on + strand, within fabYat 911.518 kb on + strand, within fabYat 911.519 kb on - strand, within fabYat 911.519 kb on - strand, within fabYat 911.539 kb on + strand, within fabYat 911.540 kb on - strand, within fabYat 911.540 kb on - strand, within fabYat 911.541 kb on + strand, within fabYat 911.541 kb on + strand, within fabYat 911.541 kb on + strand, within fabYat 911.542 kb on - strand, within fabYat 911.542 kb on - strand, within fabYat 911.542 kb on - strand, within fabYat 911.542 kb on - strand, within fabYat 911.581 kb on + strand, within fabYat 911.589 kb on + strand, within fabYat 911.590 kb on - strand, within fabYat 911.590 kb on - strand, within fabYat 911.590 kb on - strand, within fabYat 911.635 kb on + strand, within fabYat 911.659 kb on + strand, within fabY

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose
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908,863 - +1.2
908,863 - -0.5
908,913 + +0.0
908,992 - -2.8
909,011 + MCAODC_04485 0.10 +0.4
909,113 + MCAODC_04485 0.21 +0.5
909,236 + MCAODC_04485 0.35 -3.2
909,298 - MCAODC_04485 0.41 -0.7
909,300 - MCAODC_04485 0.42 +1.2
909,488 - MCAODC_04485 0.62 -1.0
909,508 + MCAODC_04485 0.64 -0.4
909,509 - MCAODC_04485 0.64 -0.5
909,509 - MCAODC_04485 0.64 +0.2
909,513 + MCAODC_04485 0.65 +2.3
909,513 + MCAODC_04485 0.65 -0.7
909,584 + MCAODC_04485 0.73 -0.2
909,585 - MCAODC_04485 0.73 +0.2
909,585 - MCAODC_04485 0.73 -0.5
909,628 - MCAODC_04485 0.77 -0.6
909,635 + MCAODC_04485 0.78 +0.0
909,636 - MCAODC_04485 0.78 -1.8
909,636 - MCAODC_04485 0.78 +0.9
909,667 - MCAODC_04485 0.82 +0.5
909,717 - MCAODC_04485 0.87 +0.6
909,766 - +0.9
909,770 + -2.0
909,771 - +0.4
909,889 + -3.3
909,891 + -0.7
909,913 - -0.4
910,064 + MCAODC_04490 0.25 -1.2
910,143 - MCAODC_04490 0.34 -1.9
910,214 - MCAODC_04490 0.42 +0.0
910,267 - MCAODC_04490 0.48 +2.0
910,330 - MCAODC_04490 0.55 -1.3
910,341 + MCAODC_04490 0.56 -3.6
910,342 - MCAODC_04490 0.56 -4.2
910,343 + MCAODC_04490 0.56 +2.1
910,363 + MCAODC_04490 0.59 +0.9
910,364 + MCAODC_04490 0.59 +0.2
910,364 + MCAODC_04490 0.59 -3.7
910,454 + MCAODC_04490 0.69 -0.1
910,455 - MCAODC_04490 0.69 +0.1
910,457 - MCAODC_04490 0.69 +1.0
910,458 + MCAODC_04490 0.69 +0.2
910,458 + MCAODC_04490 0.69 +0.8
910,459 - MCAODC_04490 0.69 +1.2
910,857 + +0.3
910,873 - +0.8
910,936 + +0.2
911,029 + +1.3
911,073 + -0.5
911,098 + -0.1
911,100 + +1.0
911,100 + +0.6
911,145 + -0.2
911,146 - -1.9
911,204 - -0.0
911,205 + -0.2
911,205 + +1.2
911,205 + -1.6
911,205 + -0.7
911,205 + -2.6
911,205 + +2.1
911,205 + -0.5
911,205 + -0.3
911,206 - +2.2
911,206 - +0.6
911,206 - +0.7
911,206 - +0.3
911,206 - +0.9
911,206 - -0.3
911,206 - -0.0
911,206 - +1.5
911,206 - +0.4
911,206 - +1.0
911,206 - +0.6
911,206 - +0.6
911,206 - +0.6
911,206 - +1.0
911,362 - fabY MCAODC_04495 0.23 -1.2
911,429 - fabY MCAODC_04495 0.30 -1.3
911,462 + fabY MCAODC_04495 0.34 +0.6
911,482 + fabY MCAODC_04495 0.36 +0.3
911,483 - fabY MCAODC_04495 0.36 -0.0
911,518 + fabY MCAODC_04495 0.40 -0.9
911,518 + fabY MCAODC_04495 0.40 +0.3
911,518 + fabY MCAODC_04495 0.40 -3.7
911,519 - fabY MCAODC_04495 0.40 +0.2
911,519 - fabY MCAODC_04495 0.40 -0.4
911,539 + fabY MCAODC_04495 0.42 -1.6
911,540 - fabY MCAODC_04495 0.42 +0.2
911,540 - fabY MCAODC_04495 0.42 +0.2
911,541 + fabY MCAODC_04495 0.42 +0.4
911,541 + fabY MCAODC_04495 0.42 +0.3
911,541 + fabY MCAODC_04495 0.42 -0.2
911,542 - fabY MCAODC_04495 0.42 -0.1
911,542 - fabY MCAODC_04495 0.42 -1.6
911,542 - fabY MCAODC_04495 0.42 +0.2
911,542 - fabY MCAODC_04495 0.42 +1.1
911,581 + fabY MCAODC_04495 0.46 +0.0
911,589 + fabY MCAODC_04495 0.47 -0.1
911,590 - fabY MCAODC_04495 0.47 -0.3
911,590 - fabY MCAODC_04495 0.47 +0.7
911,590 - fabY MCAODC_04495 0.47 +0.3
911,635 + fabY MCAODC_04495 0.52 -0.2
911,659 + fabY MCAODC_04495 0.55 +0.4

Or see this region's nucleotide sequence