Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yiiX and tnp-IS1 are separated by 144 nucleotides tnp-IS1 and MCAODC_04200 are separated by 244 nucleotides MCAODC_04200 and MCAODC_04205 are separated by 52 nucleotides MCAODC_04205 and rhsA are separated by 1 nucleotides
MCAODC_04190: yiiX - YiiX family permuted papain-like enzyme, at 851,252 to 851,860
yiiX
MCAODC_04195: tnp-IS1 - IS1 family transposase, at 852,005 to 852,277
tnp-IS1
MCAODC_04200: MCAODC_04200 - Rhs element protein, at 852,522 to 852,800
_04200
MCAODC_04205: MCAODC_04205 - hypothetical protein, at 852,853 to 853,089
_04205
MCAODC_04210: rhsA - RHS element protein, at 853,091 to 857,275
rhsA
Position (kb) 852
853
854 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 851.909 kb on - strand at 851.963 kb on + strand at 851.963 kb on + strand at 851.964 kb on - strand at 851.972 kb on + strand at 851.973 kb on - strand at 851.979 kb on - strand at 851.980 kb on + strand at 851.980 kb on + strand at 851.980 kb on + strand at 851.980 kb on + strand at 851.980 kb on + strand at 851.980 kb on + strand at 851.980 kb on + strand at 851.980 kb on + strand at 851.981 kb on - strand at 851.981 kb on - strand at 851.981 kb on - strand at 851.981 kb on - strand at 851.983 kb on + strand at 851.983 kb on + strand at 851.984 kb on - strand at 851.984 kb on - strand at 852.017 kb on - strand at 852.114 kb on + strand, within tnp-IS1 at 852.114 kb on + strand, within tnp-IS1 at 852.114 kb on + strand, within tnp-IS1 at 852.128 kb on + strand, within tnp-IS1 at 852.128 kb on + strand, within tnp-IS1 at 852.128 kb on + strand, within tnp-IS1 at 852.135 kb on - strand, within tnp-IS1 at 852.157 kb on + strand, within tnp-IS1 at 852.203 kb on + strand, within tnp-IS1 at 852.203 kb on + strand, within tnp-IS1 at 852.204 kb on - strand, within tnp-IS1 at 852.205 kb on + strand, within tnp-IS1 at 852.205 kb on + strand, within tnp-IS1 at 852.232 kb on + strand, within tnp-IS1 at 852.232 kb on + strand, within tnp-IS1 at 852.233 kb on - strand, within tnp-IS1 at 852.235 kb on + strand, within tnp-IS1 at 852.235 kb on + strand, within tnp-IS1 at 852.235 kb on + strand, within tnp-IS1 at 852.235 kb on + strand, within tnp-IS1 at 852.236 kb on - strand, within tnp-IS1 at 852.236 kb on - strand, within tnp-IS1 at 852.236 kb on - strand, within tnp-IS1 at 852.236 kb on - strand, within tnp-IS1 at 852.275 kb on + strand at 852.275 kb on + strand at 852.276 kb on - strand at 852.324 kb on + strand at 852.376 kb on + strand at 852.377 kb on - strand at 852.383 kb on - strand at 852.383 kb on - strand at 852.383 kb on - strand at 852.383 kb on - strand at 852.383 kb on - strand at 852.466 kb on - strand at 852.473 kb on + strand at 852.473 kb on + strand at 852.473 kb on + strand at 852.474 kb on - strand at 852.506 kb on + strand at 852.507 kb on - strand at 852.511 kb on - strand at 852.511 kb on - strand at 852.511 kb on - strand at 852.511 kb on - strand at 852.511 kb on - strand at 852.511 kb on - strand at 852.511 kb on - strand at 852.511 kb on - strand at 852.575 kb on + strand, within MCAODC_04200 at 852.576 kb on - strand, within MCAODC_04200 at 852.685 kb on + strand, within MCAODC_04200 at 852.686 kb on - strand, within MCAODC_04200 at 852.686 kb on - strand, within MCAODC_04200 at 852.802 kb on + strand at 852.803 kb on - strand at 852.819 kb on + strand at 853.067 kb on + strand at 853.079 kb on - strand at 853.117 kb on + strand at 853.118 kb on - strand at 853.118 kb on - strand at 853.118 kb on - strand at 853.183 kb on + strand at 853.183 kb on + strand at 853.184 kb on - strand at 853.184 kb on - strand at 853.257 kb on + strand at 853.278 kb on - strand at 853.430 kb on - strand at 853.433 kb on + strand at 853.536 kb on - strand, within rhsA at 853.576 kb on - strand, within rhsA at 853.579 kb on + strand, within rhsA at 853.579 kb on + strand, within rhsA at 853.579 kb on + strand, within rhsA at 853.579 kb on + strand, within rhsA at 853.579 kb on + strand, within rhsA at 853.579 kb on + strand, within rhsA at 853.579 kb on + strand, within rhsA at 853.579 kb on + strand, within rhsA at 853.579 kb on + strand, within rhsA at 853.579 kb on + strand, within rhsA at 853.579 kb on + strand, within rhsA at 853.579 kb on + strand, within rhsA at 853.579 kb on + strand, within rhsA at 853.579 kb on + strand, within rhsA at 853.579 kb on + strand, within rhsA at 853.579 kb on + strand, within rhsA at 853.579 kb on + strand, within rhsA at 853.580 kb on - strand, within rhsA at 853.580 kb on - strand, within rhsA at 853.580 kb on - strand, within rhsA at 853.580 kb on - strand, within rhsA at 853.580 kb on - strand, within rhsA at 853.580 kb on - strand, within rhsA at 853.580 kb on - strand, within rhsA at 853.580 kb on - strand, within rhsA at 853.580 kb on - strand, within rhsA at 853.581 kb on + strand, within rhsA at 853.581 kb on + strand, within rhsA at 853.581 kb on + strand, within rhsA at 853.581 kb on + strand, within rhsA at 853.582 kb on - strand, within rhsA at 853.627 kb on - strand, within rhsA at 853.627 kb on - strand, within rhsA at 853.627 kb on - strand, within rhsA at 853.627 kb on - strand, within rhsA at 853.627 kb on - strand, within rhsA at 853.627 kb on - strand, within rhsA at 853.627 kb on - strand, within rhsA at 853.627 kb on - strand, within rhsA
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 851,909 - +0.7 851,963 + +0.5 851,963 + +0.7 851,964 - -0.3 851,972 + -0.3 851,973 - +0.4 851,979 - +0.3 851,980 + +0.2 851,980 + +0.6 851,980 + -0.2 851,980 + -0.8 851,980 + -0.1 851,980 + -1.3 851,980 + +1.2 851,980 + -0.6 851,981 - -0.3 851,981 - +0.8 851,981 - -1.7 851,981 - -2.7 851,983 + -1.4 851,983 + +0.3 851,984 - -0.4 851,984 - -1.2 852,017 - +0.5 852,114 + tnp-IS1 MCAODC_04195 0.40 +0.5 852,114 + tnp-IS1 MCAODC_04195 0.40 +0.1 852,114 + tnp-IS1 MCAODC_04195 0.40 +1.1 852,128 + tnp-IS1 MCAODC_04195 0.45 -0.8 852,128 + tnp-IS1 MCAODC_04195 0.45 +0.4 852,128 + tnp-IS1 MCAODC_04195 0.45 +1.5 852,135 - tnp-IS1 MCAODC_04195 0.48 -1.7 852,157 + tnp-IS1 MCAODC_04195 0.56 +0.7 852,203 + tnp-IS1 MCAODC_04195 0.73 -0.3 852,203 + tnp-IS1 MCAODC_04195 0.73 +0.7 852,204 - tnp-IS1 MCAODC_04195 0.73 -0.3 852,205 + tnp-IS1 MCAODC_04195 0.73 +1.1 852,205 + tnp-IS1 MCAODC_04195 0.73 -0.3 852,232 + tnp-IS1 MCAODC_04195 0.83 +0.2 852,232 + tnp-IS1 MCAODC_04195 0.83 -0.5 852,233 - tnp-IS1 MCAODC_04195 0.84 +1.3 852,235 + tnp-IS1 MCAODC_04195 0.84 -1.0 852,235 + tnp-IS1 MCAODC_04195 0.84 +0.5 852,235 + tnp-IS1 MCAODC_04195 0.84 -0.2 852,235 + tnp-IS1 MCAODC_04195 0.84 -0.0 852,236 - tnp-IS1 MCAODC_04195 0.85 -0.5 852,236 - tnp-IS1 MCAODC_04195 0.85 -0.6 852,236 - tnp-IS1 MCAODC_04195 0.85 +0.2 852,236 - tnp-IS1 MCAODC_04195 0.85 -2.6 852,275 + +0.2 852,275 + +1.0 852,276 - +0.8 852,324 + -0.6 852,376 + +0.5 852,377 - +0.2 852,383 - +1.2 852,383 - +0.2 852,383 - -0.3 852,383 - +0.2 852,383 - -2.2 852,466 - +0.5 852,473 + +1.1 852,473 + -0.4 852,473 + +0.3 852,474 - +0.4 852,506 + +1.1 852,507 - -1.8 852,511 - -0.7 852,511 - +1.4 852,511 - -2.7 852,511 - +0.5 852,511 - +0.5 852,511 - +0.3 852,511 - -0.6 852,511 - -0.1 852,575 + MCAODC_04200 0.19 -0.6 852,576 - MCAODC_04200 0.19 +0.0 852,685 + MCAODC_04200 0.58 +1.7 852,686 - MCAODC_04200 0.59 -0.5 852,686 - MCAODC_04200 0.59 -1.3 852,802 + +0.3 852,803 - -0.7 852,819 + -1.7 853,067 + +0.4 853,079 - +0.1 853,117 + +0.3 853,118 - +0.3 853,118 - +1.4 853,118 - +0.9 853,183 + +0.7 853,183 + +0.3 853,184 - -1.3 853,184 - +1.5 853,257 + +0.8 853,278 - +0.5 853,430 - +0.7 853,433 + +0.5 853,536 - rhsA MCAODC_04210 0.11 +0.1 853,576 - rhsA MCAODC_04210 0.12 +1.3 853,579 + rhsA MCAODC_04210 0.12 -1.5 853,579 + rhsA MCAODC_04210 0.12 -0.1 853,579 + rhsA MCAODC_04210 0.12 -1.5 853,579 + rhsA MCAODC_04210 0.12 -2.5 853,579 + rhsA MCAODC_04210 0.12 -0.5 853,579 + rhsA MCAODC_04210 0.12 -0.5 853,579 + rhsA MCAODC_04210 0.12 +0.7 853,579 + rhsA MCAODC_04210 0.12 -0.0 853,579 + rhsA MCAODC_04210 0.12 +0.1 853,579 + rhsA MCAODC_04210 0.12 -1.1 853,579 + rhsA MCAODC_04210 0.12 +0.7 853,579 + rhsA MCAODC_04210 0.12 -1.1 853,579 + rhsA MCAODC_04210 0.12 +0.4 853,579 + rhsA MCAODC_04210 0.12 +0.7 853,579 + rhsA MCAODC_04210 0.12 +0.8 853,579 + rhsA MCAODC_04210 0.12 -0.6 853,579 + rhsA MCAODC_04210 0.12 +1.0 853,580 - rhsA MCAODC_04210 0.12 +0.1 853,580 - rhsA MCAODC_04210 0.12 -0.3 853,580 - rhsA MCAODC_04210 0.12 +2.0 853,580 - rhsA MCAODC_04210 0.12 +1.0 853,580 - rhsA MCAODC_04210 0.12 +0.8 853,580 - rhsA MCAODC_04210 0.12 +0.8 853,580 - rhsA MCAODC_04210 0.12 +0.2 853,580 - rhsA MCAODC_04210 0.12 +0.4 853,580 - rhsA MCAODC_04210 0.12 -3.0 853,581 + rhsA MCAODC_04210 0.12 -1.5 853,581 + rhsA MCAODC_04210 0.12 +0.1 853,581 + rhsA MCAODC_04210 0.12 +0.9 853,581 + rhsA MCAODC_04210 0.12 +1.2 853,582 - rhsA MCAODC_04210 0.12 +0.3 853,627 - rhsA MCAODC_04210 0.13 -2.8 853,627 - rhsA MCAODC_04210 0.13 +0.2 853,627 - rhsA MCAODC_04210 0.13 +0.3 853,627 - rhsA MCAODC_04210 0.13 -0.3 853,627 - rhsA MCAODC_04210 0.13 -0.5 853,627 - rhsA MCAODC_04210 0.13 +1.9 853,627 - rhsA MCAODC_04210 0.13 -0.8 853,627 - rhsA MCAODC_04210 0.13 +1.0
Or see this region's nucleotide sequence