Strain Fitness in Escherichia coli ECRC101 around MCAODC_03875
Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | L-Arabinose |
---|---|---|---|---|---|
remove | |||||
780,232 | + | nudC | MCAODC_03865 | 0.75 | -0.8 |
780,233 | - | nudC | MCAODC_03865 | 0.75 | +0.6 |
780,254 | + | nudC | MCAODC_03865 | 0.78 | +0.3 |
780,254 | + | nudC | MCAODC_03865 | 0.78 | +1.1 |
780,254 | + | nudC | MCAODC_03865 | 0.78 | +1.0 |
780,254 | + | nudC | MCAODC_03865 | 0.78 | +0.7 |
780,254 | + | nudC | MCAODC_03865 | 0.78 | -0.6 |
780,254 | + | nudC | MCAODC_03865 | 0.78 | +0.4 |
780,255 | - | nudC | MCAODC_03865 | 0.78 | -0.7 |
780,255 | - | nudC | MCAODC_03865 | 0.78 | +0.7 |
780,255 | - | nudC | MCAODC_03865 | 0.78 | -1.1 |
780,293 | + | nudC | MCAODC_03865 | 0.83 | +0.1 |
780,293 | + | nudC | MCAODC_03865 | 0.83 | -0.4 |
780,293 | + | nudC | MCAODC_03865 | 0.83 | +2.2 |
780,363 | - | +0.7 | |||
780,413 | + | +4.4 | |||
780,414 | - | -1.0 | |||
780,424 | + | +0.9 | |||
780,424 | + | -0.3 | |||
780,424 | + | -0.0 | |||
780,425 | - | +0.1 | |||
780,425 | - | +4.6 | |||
780,425 | - | +0.4 | |||
780,436 | + | +0.6 | |||
780,437 | - | +0.2 | |||
780,498 | + | +0.7 | |||
780,499 | - | -0.1 | |||
780,524 | + | -0.0 | |||
780,524 | + | +2.0 | |||
780,536 | + | +0.4 | |||
780,563 | + | -0.1 | |||
780,586 | + | rsd | MCAODC_03870 | 0.14 | +0.5 |
780,586 | + | rsd | MCAODC_03870 | 0.14 | +1.0 |
780,586 | + | rsd | MCAODC_03870 | 0.14 | +1.3 |
780,586 | + | rsd | MCAODC_03870 | 0.14 | -1.3 |
780,587 | - | rsd | MCAODC_03870 | 0.14 | +0.1 |
780,592 | + | rsd | MCAODC_03870 | 0.15 | +0.6 |
780,592 | + | rsd | MCAODC_03870 | 0.15 | -0.1 |
780,592 | + | rsd | MCAODC_03870 | 0.15 | +0.8 |
780,592 | + | rsd | MCAODC_03870 | 0.15 | -0.2 |
780,592 | + | rsd | MCAODC_03870 | 0.15 | +1.3 |
780,592 | + | rsd | MCAODC_03870 | 0.15 | +1.4 |
780,593 | - | rsd | MCAODC_03870 | 0.16 | +1.1 |
780,593 | - | rsd | MCAODC_03870 | 0.16 | +0.2 |
780,593 | - | rsd | MCAODC_03870 | 0.16 | +0.4 |
780,593 | - | rsd | MCAODC_03870 | 0.16 | +0.7 |
780,593 | - | rsd | MCAODC_03870 | 0.16 | -0.2 |
780,593 | - | rsd | MCAODC_03870 | 0.16 | -0.3 |
780,593 | - | rsd | MCAODC_03870 | 0.16 | +1.8 |
780,593 | - | rsd | MCAODC_03870 | 0.16 | -0.4 |
780,593 | - | rsd | MCAODC_03870 | 0.16 | +0.6 |
780,593 | - | rsd | MCAODC_03870 | 0.16 | +0.3 |
780,596 | + | rsd | MCAODC_03870 | 0.16 | +0.4 |
780,596 | + | rsd | MCAODC_03870 | 0.16 | +1.0 |
780,596 | + | rsd | MCAODC_03870 | 0.16 | +0.2 |
780,596 | + | rsd | MCAODC_03870 | 0.16 | +2.4 |
780,596 | + | rsd | MCAODC_03870 | 0.16 | +0.0 |
780,596 | + | rsd | MCAODC_03870 | 0.16 | -1.1 |
780,596 | + | rsd | MCAODC_03870 | 0.16 | +0.8 |
780,597 | - | rsd | MCAODC_03870 | 0.16 | -1.7 |
780,597 | - | rsd | MCAODC_03870 | 0.16 | +0.5 |
780,597 | - | rsd | MCAODC_03870 | 0.16 | +0.2 |
780,615 | + | rsd | MCAODC_03870 | 0.20 | +0.4 |
780,616 | - | rsd | MCAODC_03870 | 0.20 | +1.3 |
780,616 | - | rsd | MCAODC_03870 | 0.20 | +0.8 |
780,618 | + | rsd | MCAODC_03870 | 0.21 | -0.5 |
780,618 | + | rsd | MCAODC_03870 | 0.21 | +0.9 |
780,618 | + | rsd | MCAODC_03870 | 0.21 | +0.1 |
780,618 | + | rsd | MCAODC_03870 | 0.21 | -0.2 |
780,618 | + | rsd | MCAODC_03870 | 0.21 | +1.2 |
780,619 | - | rsd | MCAODC_03870 | 0.21 | +0.2 |
780,619 | - | rsd | MCAODC_03870 | 0.21 | +0.4 |
780,619 | - | rsd | MCAODC_03870 | 0.21 | -0.2 |
780,635 | + | rsd | MCAODC_03870 | 0.24 | -2.8 |
780,635 | + | rsd | MCAODC_03870 | 0.24 | +0.5 |
780,636 | - | rsd | MCAODC_03870 | 0.25 | -0.0 |
780,636 | - | rsd | MCAODC_03870 | 0.25 | +0.5 |
780,654 | + | rsd | MCAODC_03870 | 0.28 | -0.3 |
780,654 | + | rsd | MCAODC_03870 | 0.28 | +0.6 |
780,654 | + | rsd | MCAODC_03870 | 0.28 | -0.2 |
780,654 | + | rsd | MCAODC_03870 | 0.28 | +0.4 |
780,654 | + | rsd | MCAODC_03870 | 0.28 | +0.3 |
780,655 | - | rsd | MCAODC_03870 | 0.29 | +1.5 |
780,655 | - | rsd | MCAODC_03870 | 0.29 | +0.1 |
780,708 | + | rsd | MCAODC_03870 | 0.40 | +0.9 |
780,708 | + | rsd | MCAODC_03870 | 0.40 | +0.3 |
780,708 | + | rsd | MCAODC_03870 | 0.40 | -1.9 |
780,709 | - | rsd | MCAODC_03870 | 0.40 | +0.8 |
780,709 | - | rsd | MCAODC_03870 | 0.40 | +0.6 |
780,709 | - | rsd | MCAODC_03870 | 0.40 | -0.1 |
780,732 | - | rsd | MCAODC_03870 | 0.45 | +2.2 |
780,735 | + | rsd | MCAODC_03870 | 0.45 | -0.3 |
780,735 | + | rsd | MCAODC_03870 | 0.45 | -0.0 |
780,752 | + | rsd | MCAODC_03870 | 0.49 | +0.2 |
780,753 | - | rsd | MCAODC_03870 | 0.49 | -0.4 |
780,753 | - | rsd | MCAODC_03870 | 0.49 | +0.7 |
780,827 | + | rsd | MCAODC_03870 | 0.65 | -1.4 |
780,835 | - | rsd | MCAODC_03870 | 0.66 | +1.0 |
780,837 | + | rsd | MCAODC_03870 | 0.67 | -0.5 |
780,838 | - | rsd | MCAODC_03870 | 0.67 | +1.4 |
780,876 | + | rsd | MCAODC_03870 | 0.75 | -0.0 |
780,877 | - | rsd | MCAODC_03870 | 0.75 | -0.7 |
781,015 | + | -1.6 | |||
781,015 | + | -0.6 | |||
781,020 | + | +0.3 | |||
781,020 | + | +0.0 | |||
781,047 | - | -0.3 | |||
781,068 | - | -0.4 | |||
781,068 | - | +0.2 | |||
781,114 | + | +0.3 | |||
781,117 | + | -0.5 | |||
781,117 | + | -1.9 | |||
781,118 | - | -0.4 | |||
781,139 | + | -0.2 | |||
781,140 | - | +0.2 | |||
781,210 | - | -0.8 | |||
781,210 | - | +0.6 | |||
781,210 | - | -0.6 | |||
781,210 | - | -1.1 | |||
781,227 | + | -2.2 | |||
781,227 | + | -0.1 | |||
781,227 | + | -1.3 | |||
781,227 | + | -3.3 | |||
781,227 | + | -1.5 | |||
781,228 | - | -2.2 | |||
781,228 | - | -1.0 | |||
781,228 | - | +0.6 | |||
781,228 | - | -2.6 | |||
781,327 | + | -3.2 | |||
781,327 | + | -1.0 | |||
781,327 | + | -0.6 | |||
781,328 | - | -0.6 | |||
781,328 | - | -2.4 | |||
781,329 | + | -0.4 | |||
781,391 | + | -0.4 | |||
781,391 | + | -3.7 | |||
781,392 | - | -0.9 | |||
781,448 | - | thiC | MCAODC_03875 | 0.12 | -0.6 |
781,466 | - | thiC | MCAODC_03875 | 0.13 | +0.4 |
781,514 | + | thiC | MCAODC_03875 | 0.15 | +0.4 |
781,576 | + | thiC | MCAODC_03875 | 0.18 | -1.7 |
781,576 | + | thiC | MCAODC_03875 | 0.18 | -1.3 |
781,577 | - | thiC | MCAODC_03875 | 0.18 | -0.6 |
781,577 | - | thiC | MCAODC_03875 | 0.18 | -0.5 |
781,582 | - | thiC | MCAODC_03875 | 0.19 | +0.8 |
781,631 | + | thiC | MCAODC_03875 | 0.21 | -1.9 |
781,631 | + | thiC | MCAODC_03875 | 0.21 | -1.4 |
781,631 | + | thiC | MCAODC_03875 | 0.21 | -1.9 |
781,631 | + | thiC | MCAODC_03875 | 0.21 | -0.4 |
781,631 | + | thiC | MCAODC_03875 | 0.21 | -0.4 |
781,632 | - | thiC | MCAODC_03875 | 0.21 | +0.3 |
781,769 | + | thiC | MCAODC_03875 | 0.29 | +0.1 |
781,867 | - | thiC | MCAODC_03875 | 0.34 | -0.1 |
781,882 | - | thiC | MCAODC_03875 | 0.34 | -1.3 |
781,882 | - | thiC | MCAODC_03875 | 0.34 | +0.1 |
781,882 | - | thiC | MCAODC_03875 | 0.34 | -0.6 |
781,909 | - | thiC | MCAODC_03875 | 0.36 | +0.9 |
781,998 | - | thiC | MCAODC_03875 | 0.41 | -2.1 |
781,998 | - | thiC | MCAODC_03875 | 0.41 | -0.1 |
781,998 | - | thiC | MCAODC_03875 | 0.41 | -2.2 |
782,051 | - | thiC | MCAODC_03875 | 0.43 | -0.9 |
782,051 | - | thiC | MCAODC_03875 | 0.43 | -1.9 |
782,103 | + | thiC | MCAODC_03875 | 0.46 | -0.8 |
782,104 | - | thiC | MCAODC_03875 | 0.46 | -1.4 |
782,157 | + | thiC | MCAODC_03875 | 0.49 | -0.5 |
782,212 | + | thiC | MCAODC_03875 | 0.52 | -0.8 |
782,212 | + | thiC | MCAODC_03875 | 0.52 | -4.0 |
782,212 | + | thiC | MCAODC_03875 | 0.52 | +0.8 |
782,212 | + | thiC | MCAODC_03875 | 0.52 | +0.1 |
782,246 | - | thiC | MCAODC_03875 | 0.54 | -0.3 |
782,246 | - | thiC | MCAODC_03875 | 0.54 | -0.9 |
782,246 | - | thiC | MCAODC_03875 | 0.54 | +0.1 |
782,345 | - | thiC | MCAODC_03875 | 0.59 | +0.4 |
782,383 | + | thiC | MCAODC_03875 | 0.61 | -0.6 |
782,383 | + | thiC | MCAODC_03875 | 0.61 | -0.2 |
782,427 | + | thiC | MCAODC_03875 | 0.63 | -1.7 |
782,469 | + | thiC | MCAODC_03875 | 0.65 | -1.6 |
782,469 | + | thiC | MCAODC_03875 | 0.65 | -1.1 |
782,469 | + | thiC | MCAODC_03875 | 0.65 | -3.4 |
782,503 | + | thiC | MCAODC_03875 | 0.67 | -0.5 |
782,503 | + | thiC | MCAODC_03875 | 0.67 | -0.6 |
782,504 | - | thiC | MCAODC_03875 | 0.67 | -0.6 |
782,504 | - | thiC | MCAODC_03875 | 0.67 | +0.9 |
782,504 | - | thiC | MCAODC_03875 | 0.67 | -0.7 |
782,565 | + | thiC | MCAODC_03875 | 0.71 | -2.7 |
782,626 | - | thiC | MCAODC_03875 | 0.74 | -0.9 |
782,710 | + | thiC | MCAODC_03875 | 0.78 | +1.4 |
782,710 | + | thiC | MCAODC_03875 | 0.78 | -1.6 |
782,711 | - | thiC | MCAODC_03875 | 0.78 | +1.4 |
782,711 | - | thiC | MCAODC_03875 | 0.78 | -0.4 |
782,711 | - | thiC | MCAODC_03875 | 0.78 | -1.1 |
782,715 | - | thiC | MCAODC_03875 | 0.78 | +0.8 |
782,745 | + | thiC | MCAODC_03875 | 0.80 | +0.6 |
782,745 | + | thiC | MCAODC_03875 | 0.80 | -0.6 |
782,746 | - | thiC | MCAODC_03875 | 0.80 | -0.5 |
782,758 | - | thiC | MCAODC_03875 | 0.81 | +1.0 |
782,758 | - | thiC | MCAODC_03875 | 0.81 | -1.3 |
782,769 | + | thiC | MCAODC_03875 | 0.81 | -0.7 |
782,769 | + | thiC | MCAODC_03875 | 0.81 | -2.1 |
782,769 | + | thiC | MCAODC_03875 | 0.81 | -0.3 |
782,770 | - | thiC | MCAODC_03875 | 0.81 | -1.1 |
782,770 | - | thiC | MCAODC_03875 | 0.81 | -2.2 |
782,776 | + | thiC | MCAODC_03875 | 0.82 | -3.2 |
782,776 | + | thiC | MCAODC_03875 | 0.82 | -0.1 |
782,776 | + | thiC | MCAODC_03875 | 0.82 | -1.6 |
782,777 | - | thiC | MCAODC_03875 | 0.82 | -1.3 |
782,777 | - | thiC | MCAODC_03875 | 0.82 | -1.2 |
782,777 | - | thiC | MCAODC_03875 | 0.82 | -1.4 |
782,777 | - | thiC | MCAODC_03875 | 0.82 | +0.3 |
782,777 | - | thiC | MCAODC_03875 | 0.82 | -1.2 |
782,778 | + | thiC | MCAODC_03875 | 0.82 | -1.4 |
782,778 | + | thiC | MCAODC_03875 | 0.82 | -0.6 |
782,778 | + | thiC | MCAODC_03875 | 0.82 | +0.7 |
782,778 | + | thiC | MCAODC_03875 | 0.82 | -0.5 |
782,778 | + | thiC | MCAODC_03875 | 0.82 | -2.4 |
782,778 | + | thiC | MCAODC_03875 | 0.82 | -1.1 |
782,778 | + | thiC | MCAODC_03875 | 0.82 | -3.1 |
782,779 | - | thiC | MCAODC_03875 | 0.82 | -0.7 |
782,779 | - | thiC | MCAODC_03875 | 0.82 | +0.4 |
782,886 | + | thiC | MCAODC_03875 | 0.87 | -0.5 |
782,886 | + | thiC | MCAODC_03875 | 0.87 | -3.1 |
782,887 | - | thiC | MCAODC_03875 | 0.88 | -1.1 |
782,952 | + | -0.9 | |||
782,953 | - | +0.8 | |||
783,042 | + | -0.9 | |||
783,042 | + | -2.9 | |||
783,056 | + | -0.3 | |||
783,063 | + | -3.3 | |||
783,063 | + | -1.5 | |||
783,064 | - | +1.0 | |||
783,100 | + | -0.5 | |||
783,126 | + | -1.4 | |||
783,126 | + | +0.6 | |||
783,126 | + | +1.5 | |||
783,127 | - | -1.2 | |||
783,127 | - | +1.0 | |||
783,148 | + | -1.0 | |||
783,148 | + | +0.0 | |||
783,187 | + | thiE | MCAODC_03880 | 0.10 | -0.2 |
783,187 | + | thiE | MCAODC_03880 | 0.10 | +0.6 |
783,187 | + | thiE | MCAODC_03880 | 0.10 | -2.9 |
783,187 | + | thiE | MCAODC_03880 | 0.10 | +0.1 |
783,188 | - | thiE | MCAODC_03880 | 0.10 | +0.1 |
783,188 | - | thiE | MCAODC_03880 | 0.10 | +0.2 |
783,188 | - | thiE | MCAODC_03880 | 0.10 | +0.1 |
783,188 | - | thiE | MCAODC_03880 | 0.10 | -0.9 |
783,188 | - | thiE | MCAODC_03880 | 0.10 | -1.2 |
783,220 | + | thiE | MCAODC_03880 | 0.15 | +0.3 |
783,220 | + | thiE | MCAODC_03880 | 0.15 | -0.9 |
783,220 | + | thiE | MCAODC_03880 | 0.15 | +0.1 |
783,220 | + | thiE | MCAODC_03880 | 0.15 | +0.6 |
783,220 | + | thiE | MCAODC_03880 | 0.15 | +0.1 |
783,221 | - | thiE | MCAODC_03880 | 0.15 | +0.1 |
783,221 | - | thiE | MCAODC_03880 | 0.15 | +0.4 |
783,221 | - | thiE | MCAODC_03880 | 0.15 | -0.3 |
783,221 | - | thiE | MCAODC_03880 | 0.15 | -0.1 |
783,224 | + | thiE | MCAODC_03880 | 0.16 | +0.5 |
783,225 | - | thiE | MCAODC_03880 | 0.16 | -0.3 |
783,236 | - | thiE | MCAODC_03880 | 0.18 | -0.3 |
783,307 | - | thiE | MCAODC_03880 | 0.29 | +0.1 |
783,495 | + | thiE | MCAODC_03880 | 0.58 | -2.6 |
783,495 | + | thiE | MCAODC_03880 | 0.58 | -0.5 |
783,495 | + | thiE | MCAODC_03880 | 0.58 | +0.1 |
783,495 | + | thiE | MCAODC_03880 | 0.58 | -1.5 |
783,495 | + | thiE | MCAODC_03880 | 0.58 | -0.7 |
783,495 | + | thiE | MCAODC_03880 | 0.58 | +0.8 |
783,495 | + | thiE | MCAODC_03880 | 0.58 | -2.5 |
783,495 | + | thiE | MCAODC_03880 | 0.58 | -0.7 |
783,496 | - | thiE | MCAODC_03880 | 0.59 | -0.9 |
783,496 | - | thiE | MCAODC_03880 | 0.59 | -0.6 |
783,496 | - | thiE | MCAODC_03880 | 0.59 | -1.3 |
783,496 | - | thiE | MCAODC_03880 | 0.59 | -0.8 |
783,496 | - | thiE | MCAODC_03880 | 0.59 | -0.9 |
783,496 | - | thiE | MCAODC_03880 | 0.59 | -0.8 |
783,496 | - | thiE | MCAODC_03880 | 0.59 | -0.8 |
783,497 | + | thiE | MCAODC_03880 | 0.59 | -1.4 |
783,598 | - | thiE | MCAODC_03880 | 0.75 | +1.0 |
783,689 | + | thiE | MCAODC_03880 | 0.89 | -1.6 |
783,690 | - | thiE | MCAODC_03880 | 0.89 | -1.2 |
783,776 | - | -0.4 | |||
783,777 | + | -0.8 | |||
783,870 | + | thiF | MCAODC_03885 | 0.16 | -2.3 |
783,870 | + | thiF | MCAODC_03885 | 0.16 | -2.0 |
783,886 | + | thiF | MCAODC_03885 | 0.18 | -1.9 |
783,886 | + | thiF | MCAODC_03885 | 0.18 | -1.1 |
783,944 | + | thiF | MCAODC_03885 | 0.26 | -0.2 |
783,945 | - | thiF | MCAODC_03885 | 0.26 | -0.5 |
784,058 | + | thiF | MCAODC_03885 | 0.41 | -0.5 |
784,058 | + | thiF | MCAODC_03885 | 0.41 | -1.4 |
784,058 | + | thiF | MCAODC_03885 | 0.41 | +0.1 |
784,058 | + | thiF | MCAODC_03885 | 0.41 | +0.6 |
784,058 | + | thiF | MCAODC_03885 | 0.41 | +0.4 |
784,058 | + | thiF | MCAODC_03885 | 0.41 | -0.5 |
784,059 | - | thiF | MCAODC_03885 | 0.41 | -0.8 |
784,059 | - | thiF | MCAODC_03885 | 0.41 | -0.8 |
784,059 | - | thiF | MCAODC_03885 | 0.41 | -0.4 |
784,059 | - | thiF | MCAODC_03885 | 0.41 | -0.9 |
784,059 | - | thiF | MCAODC_03885 | 0.41 | -0.9 |
784,059 | - | thiF | MCAODC_03885 | 0.41 | -0.8 |
784,059 | - | thiF | MCAODC_03885 | 0.41 | -2.5 |
784,059 | - | thiF | MCAODC_03885 | 0.41 | -0.4 |
784,059 | - | thiF | MCAODC_03885 | 0.41 | +0.3 |
784,085 | + | thiF | MCAODC_03885 | 0.44 | +1.0 |
784,085 | + | thiF | MCAODC_03885 | 0.44 | -0.6 |
784,086 | - | thiF | MCAODC_03885 | 0.44 | -0.2 |
Or see this region's nucleotide sequence