Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt pepE and yjbB are separated by 90 nucleotides yjbB and metH are separated by 219 nucleotides
MCAODC_03730: pepE - dipeptidase PepE, at 747,609 to 748,298
pepE
MCAODC_03735: yjbB - Uncharacterized protein YjbB, at 748,389 to 750,020
yjbB
MCAODC_03740: metH - methionine synthase, at 750,240 to 753,923
metH
Position (kb) 748
749
750
751 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 747.441 kb on + strand at 747.451 kb on - strand at 747.458 kb on - strand at 747.472 kb on + strand at 747.523 kb on + strand at 747.524 kb on - strand at 747.524 kb on - strand at 747.548 kb on + strand at 747.548 kb on + strand at 747.548 kb on + strand at 747.548 kb on + strand at 747.549 kb on - strand at 747.549 kb on - strand at 747.549 kb on - strand at 747.570 kb on + strand at 747.571 kb on - strand at 747.571 kb on - strand at 747.592 kb on + strand at 747.593 kb on - strand at 747.593 kb on - strand at 747.623 kb on - strand at 747.630 kb on - strand at 747.630 kb on - strand at 747.717 kb on - strand, within pepE at 747.753 kb on + strand, within pepE at 747.753 kb on + strand, within pepE at 747.754 kb on - strand, within pepE at 747.812 kb on + strand, within pepE at 747.875 kb on + strand, within pepE at 747.876 kb on - strand, within pepE at 747.926 kb on + strand, within pepE at 747.927 kb on - strand, within pepE at 747.954 kb on + strand, within pepE at 747.954 kb on + strand, within pepE at 747.954 kb on + strand, within pepE at 747.954 kb on + strand, within pepE at 747.954 kb on + strand, within pepE at 747.954 kb on + strand, within pepE at 747.955 kb on - strand, within pepE at 747.956 kb on + strand, within pepE at 748.001 kb on + strand, within pepE at 748.001 kb on + strand, within pepE at 748.002 kb on - strand, within pepE at 748.002 kb on - strand, within pepE at 748.014 kb on - strand, within pepE at 748.131 kb on - strand, within pepE at 748.131 kb on - strand, within pepE at 748.206 kb on - strand, within pepE at 748.242 kb on + strand at 748.242 kb on + strand at 748.242 kb on + strand at 748.242 kb on + strand at 748.242 kb on + strand at 748.243 kb on - strand at 748.243 kb on - strand at 748.297 kb on - strand at 748.336 kb on - strand at 748.364 kb on + strand at 748.373 kb on + strand at 748.373 kb on + strand at 748.373 kb on + strand at 748.373 kb on + strand at 748.387 kb on + strand at 748.388 kb on - strand at 748.388 kb on - strand at 748.390 kb on + strand at 748.391 kb on - strand at 748.438 kb on + strand at 748.439 kb on - strand at 748.439 kb on - strand at 748.475 kb on + strand at 748.475 kb on + strand at 748.475 kb on + strand at 748.476 kb on - strand at 748.476 kb on - strand at 748.485 kb on + strand at 748.486 kb on - strand at 748.491 kb on + strand at 748.497 kb on + strand at 748.498 kb on - strand at 748.571 kb on + strand, within yjbB at 748.656 kb on + strand, within yjbB at 748.662 kb on - strand, within yjbB at 748.662 kb on - strand, within yjbB at 748.678 kb on + strand, within yjbB at 748.678 kb on + strand, within yjbB at 748.679 kb on - strand, within yjbB at 748.754 kb on + strand, within yjbB at 748.754 kb on + strand, within yjbB at 748.870 kb on + strand, within yjbB at 748.870 kb on + strand, within yjbB at 748.878 kb on - strand, within yjbB at 748.878 kb on - strand, within yjbB at 748.886 kb on + strand, within yjbB at 748.887 kb on - strand, within yjbB at 748.888 kb on + strand, within yjbB at 748.888 kb on + strand, within yjbB at 748.888 kb on + strand, within yjbB at 748.889 kb on - strand, within yjbB at 748.901 kb on + strand, within yjbB at 748.902 kb on - strand, within yjbB at 748.917 kb on - strand, within yjbB at 748.917 kb on - strand, within yjbB at 748.958 kb on + strand, within yjbB at 748.959 kb on - strand, within yjbB at 748.959 kb on - strand, within yjbB at 749.043 kb on - strand, within yjbB at 749.070 kb on - strand, within yjbB at 749.076 kb on + strand, within yjbB at 749.166 kb on + strand, within yjbB at 749.166 kb on + strand, within yjbB at 749.166 kb on + strand, within yjbB at 749.166 kb on + strand, within yjbB at 749.166 kb on + strand, within yjbB at 749.166 kb on + strand, within yjbB at 749.167 kb on - strand, within yjbB at 749.167 kb on - strand, within yjbB at 749.167 kb on - strand, within yjbB at 749.167 kb on - strand, within yjbB at 749.167 kb on - strand, within yjbB at 749.167 kb on - strand, within yjbB at 749.167 kb on - strand, within yjbB at 749.167 kb on - strand, within yjbB at 749.176 kb on + strand, within yjbB at 749.176 kb on + strand, within yjbB at 749.176 kb on + strand, within yjbB at 749.176 kb on + strand, within yjbB at 749.177 kb on - strand, within yjbB at 749.177 kb on - strand, within yjbB at 749.191 kb on + strand, within yjbB at 749.191 kb on + strand, within yjbB at 749.264 kb on + strand, within yjbB at 749.265 kb on - strand, within yjbB at 749.285 kb on + strand, within yjbB at 749.286 kb on - strand, within yjbB at 749.411 kb on + strand, within yjbB at 749.412 kb on - strand, within yjbB at 749.412 kb on - strand, within yjbB at 749.445 kb on + strand, within yjbB at 749.445 kb on + strand, within yjbB at 749.465 kb on - strand, within yjbB at 749.471 kb on + strand, within yjbB at 749.687 kb on + strand, within yjbB at 749.687 kb on + strand, within yjbB at 749.688 kb on - strand, within yjbB at 749.692 kb on - strand, within yjbB at 749.709 kb on + strand, within yjbB at 749.837 kb on + strand, within yjbB at 749.838 kb on - strand, within yjbB at 749.847 kb on + strand, within yjbB at 749.848 kb on - strand, within yjbB at 749.947 kb on - strand at 749.963 kb on + strand at 749.963 kb on + strand at 749.964 kb on - strand at 749.964 kb on - strand at 749.964 kb on - strand at 750.005 kb on + strand at 750.015 kb on + strand at 750.043 kb on + strand at 750.043 kb on + strand at 750.043 kb on + strand at 750.043 kb on + strand at 750.044 kb on - strand at 750.044 kb on - strand at 750.045 kb on + strand at 750.045 kb on + strand at 750.045 kb on + strand at 750.045 kb on + strand at 750.045 kb on + strand at 750.045 kb on + strand at 750.045 kb on + strand at 750.046 kb on - strand at 750.046 kb on - strand at 750.046 kb on - strand at 750.046 kb on - strand at 750.046 kb on - strand at 750.102 kb on + strand at 750.102 kb on + strand at 750.158 kb on + strand at 750.158 kb on + strand at 750.159 kb on - strand at 750.160 kb on + strand at 750.160 kb on + strand at 750.160 kb on + strand at 750.160 kb on + strand at 750.160 kb on + strand at 750.160 kb on + strand at 750.160 kb on + strand at 750.161 kb on - strand at 750.161 kb on - strand at 750.161 kb on - strand at 750.161 kb on - strand at 750.161 kb on - strand at 750.161 kb on - strand at 750.171 kb on + strand at 750.172 kb on - strand at 750.175 kb on - strand at 750.178 kb on - strand at 750.178 kb on - strand at 750.215 kb on + strand at 750.299 kb on + strand at 750.316 kb on + strand at 750.316 kb on + strand at 750.316 kb on + strand at 750.358 kb on + strand at 750.359 kb on - strand at 750.359 kb on - strand at 750.359 kb on - strand at 750.382 kb on + strand at 750.488 kb on + strand at 750.600 kb on - strand at 750.619 kb on + strand, within metH at 750.676 kb on + strand, within metH at 750.676 kb on + strand, within metH at 750.754 kb on + strand, within metH at 750.754 kb on + strand, within metH at 750.755 kb on - strand, within metH at 750.802 kb on + strand, within metH at 750.802 kb on + strand, within metH at 750.802 kb on + strand, within metH at 750.802 kb on + strand, within metH at 750.802 kb on + strand, within metH at 750.802 kb on + strand, within metH at 750.884 kb on - strand, within metH at 750.963 kb on + strand, within metH at 750.963 kb on + strand, within metH at 750.964 kb on - strand, within metH at 750.968 kb on + strand, within metH at 750.969 kb on - strand, within metH at 750.993 kb on - strand, within metH
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 747,441 + -4.0 747,451 - -1.1 747,458 - -1.8 747,472 + +0.6 747,523 + -0.5 747,524 - +0.4 747,524 - +1.3 747,548 + +0.2 747,548 + -0.2 747,548 + +1.4 747,548 + -1.8 747,549 - -0.5 747,549 - +0.8 747,549 - +0.3 747,570 + +0.3 747,571 - +0.2 747,571 - -0.5 747,592 + +0.2 747,593 - +0.5 747,593 - +0.2 747,623 - -0.8 747,630 - +0.4 747,630 - +0.9 747,717 - pepE MCAODC_03730 0.16 -1.1 747,753 + pepE MCAODC_03730 0.21 -0.8 747,753 + pepE MCAODC_03730 0.21 -0.9 747,754 - pepE MCAODC_03730 0.21 +0.1 747,812 + pepE MCAODC_03730 0.29 -0.6 747,875 + pepE MCAODC_03730 0.39 -0.3 747,876 - pepE MCAODC_03730 0.39 -0.2 747,926 + pepE MCAODC_03730 0.46 -0.9 747,927 - pepE MCAODC_03730 0.46 +0.1 747,954 + pepE MCAODC_03730 0.50 +0.9 747,954 + pepE MCAODC_03730 0.50 +0.8 747,954 + pepE MCAODC_03730 0.50 +1.0 747,954 + pepE MCAODC_03730 0.50 +0.7 747,954 + pepE MCAODC_03730 0.50 +1.2 747,954 + pepE MCAODC_03730 0.50 -0.1 747,955 - pepE MCAODC_03730 0.50 +0.6 747,956 + pepE MCAODC_03730 0.50 -1.0 748,001 + pepE MCAODC_03730 0.57 +0.8 748,001 + pepE MCAODC_03730 0.57 +0.7 748,002 - pepE MCAODC_03730 0.57 +1.6 748,002 - pepE MCAODC_03730 0.57 +0.6 748,014 - pepE MCAODC_03730 0.59 +0.9 748,131 - pepE MCAODC_03730 0.76 -0.1 748,131 - pepE MCAODC_03730 0.76 -1.8 748,206 - pepE MCAODC_03730 0.87 +1.1 748,242 + +0.0 748,242 + +0.1 748,242 + +0.7 748,242 + -0.2 748,242 + +0.4 748,243 - +0.3 748,243 - +0.5 748,297 - -0.7 748,336 - +0.6 748,364 + -1.2 748,373 + +1.2 748,373 + -0.0 748,373 + +0.8 748,373 + -1.1 748,387 + +1.2 748,388 - -0.8 748,388 - +1.6 748,390 + -1.4 748,391 - +0.0 748,438 + -0.8 748,439 - +1.0 748,439 - +1.8 748,475 + +0.2 748,475 + +0.5 748,475 + -1.3 748,476 - +0.3 748,476 - -0.2 748,485 + +0.8 748,486 - -0.4 748,491 + -0.9 748,497 + +0.1 748,498 - +0.9 748,571 + yjbB MCAODC_03735 0.11 -0.1 748,656 + yjbB MCAODC_03735 0.16 -0.4 748,662 - yjbB MCAODC_03735 0.17 -0.5 748,662 - yjbB MCAODC_03735 0.17 -2.7 748,678 + yjbB MCAODC_03735 0.18 +1.0 748,678 + yjbB MCAODC_03735 0.18 +0.4 748,679 - yjbB MCAODC_03735 0.18 +0.2 748,754 + yjbB MCAODC_03735 0.22 +0.2 748,754 + yjbB MCAODC_03735 0.22 +1.5 748,870 + yjbB MCAODC_03735 0.29 +1.2 748,870 + yjbB MCAODC_03735 0.29 +0.4 748,878 - yjbB MCAODC_03735 0.30 -3.3 748,878 - yjbB MCAODC_03735 0.30 +0.5 748,886 + yjbB MCAODC_03735 0.30 +0.2 748,887 - yjbB MCAODC_03735 0.31 -0.6 748,888 + yjbB MCAODC_03735 0.31 +0.1 748,888 + yjbB MCAODC_03735 0.31 -0.4 748,888 + yjbB MCAODC_03735 0.31 +0.1 748,889 - yjbB MCAODC_03735 0.31 -3.2 748,901 + yjbB MCAODC_03735 0.31 -0.0 748,902 - yjbB MCAODC_03735 0.31 +0.9 748,917 - yjbB MCAODC_03735 0.32 +1.4 748,917 - yjbB MCAODC_03735 0.32 -1.1 748,958 + yjbB MCAODC_03735 0.35 +0.5 748,959 - yjbB MCAODC_03735 0.35 -1.2 748,959 - yjbB MCAODC_03735 0.35 +0.8 749,043 - yjbB MCAODC_03735 0.40 -0.1 749,070 - yjbB MCAODC_03735 0.42 -1.2 749,076 + yjbB MCAODC_03735 0.42 +0.6 749,166 + yjbB MCAODC_03735 0.48 -0.5 749,166 + yjbB MCAODC_03735 0.48 +1.3 749,166 + yjbB MCAODC_03735 0.48 +0.5 749,166 + yjbB MCAODC_03735 0.48 -2.9 749,166 + yjbB MCAODC_03735 0.48 -1.7 749,166 + yjbB MCAODC_03735 0.48 -0.6 749,167 - yjbB MCAODC_03735 0.48 +0.5 749,167 - yjbB MCAODC_03735 0.48 -0.4 749,167 - yjbB MCAODC_03735 0.48 +0.5 749,167 - yjbB MCAODC_03735 0.48 +0.2 749,167 - yjbB MCAODC_03735 0.48 +0.2 749,167 - yjbB MCAODC_03735 0.48 +1.5 749,167 - yjbB MCAODC_03735 0.48 +1.7 749,167 - yjbB MCAODC_03735 0.48 +0.9 749,176 + yjbB MCAODC_03735 0.48 +0.2 749,176 + yjbB MCAODC_03735 0.48 -0.3 749,176 + yjbB MCAODC_03735 0.48 +0.1 749,176 + yjbB MCAODC_03735 0.48 +0.7 749,177 - yjbB MCAODC_03735 0.48 -1.4 749,177 - yjbB MCAODC_03735 0.48 -2.3 749,191 + yjbB MCAODC_03735 0.49 -1.6 749,191 + yjbB MCAODC_03735 0.49 -0.6 749,264 + yjbB MCAODC_03735 0.54 +0.7 749,265 - yjbB MCAODC_03735 0.54 -0.7 749,285 + yjbB MCAODC_03735 0.55 -2.5 749,286 - yjbB MCAODC_03735 0.55 +1.0 749,411 + yjbB MCAODC_03735 0.63 +0.7 749,412 - yjbB MCAODC_03735 0.63 +0.7 749,412 - yjbB MCAODC_03735 0.63 +0.6 749,445 + yjbB MCAODC_03735 0.65 -0.5 749,445 + yjbB MCAODC_03735 0.65 +0.4 749,465 - yjbB MCAODC_03735 0.66 -0.8 749,471 + yjbB MCAODC_03735 0.66 -0.0 749,687 + yjbB MCAODC_03735 0.80 -1.0 749,687 + yjbB MCAODC_03735 0.80 +0.5 749,688 - yjbB MCAODC_03735 0.80 +0.7 749,692 - yjbB MCAODC_03735 0.80 -0.2 749,709 + yjbB MCAODC_03735 0.81 -1.8 749,837 + yjbB MCAODC_03735 0.89 +0.5 749,838 - yjbB MCAODC_03735 0.89 +0.5 749,847 + yjbB MCAODC_03735 0.89 +0.1 749,848 - yjbB MCAODC_03735 0.89 +1.9 749,947 - +0.6 749,963 + +0.2 749,963 + +0.1 749,964 - -0.1 749,964 - -0.6 749,964 - +0.3 750,005 + +1.4 750,015 + -0.5 750,043 + +1.1 750,043 + +1.3 750,043 + -1.0 750,043 + +0.1 750,044 - +0.7 750,044 - +0.6 750,045 + +0.6 750,045 + -1.9 750,045 + +0.1 750,045 + +0.4 750,045 + +0.1 750,045 + +0.3 750,045 + +0.7 750,046 - -1.2 750,046 - -0.0 750,046 - +0.6 750,046 - +0.6 750,046 - +0.1 750,102 + +2.4 750,102 + +0.3 750,158 + +0.2 750,158 + +0.4 750,159 - +1.5 750,160 + +0.9 750,160 + -0.9 750,160 + +1.8 750,160 + -2.5 750,160 + +0.3 750,160 + +0.5 750,160 + -0.3 750,161 - -0.4 750,161 - +0.5 750,161 - +0.4 750,161 - -0.1 750,161 - +0.3 750,161 - +0.6 750,171 + +0.7 750,172 - -0.3 750,175 - +0.7 750,178 - +0.2 750,178 - +2.6 750,215 + -0.0 750,299 + -0.0 750,316 + +1.2 750,316 + -3.9 750,316 + +0.0 750,358 + -0.5 750,359 - -1.1 750,359 - +0.3 750,359 - +0.0 750,382 + -0.0 750,488 + -0.4 750,600 - +0.9 750,619 + metH MCAODC_03740 0.10 -0.4 750,676 + metH MCAODC_03740 0.12 -2.5 750,676 + metH MCAODC_03740 0.12 -2.2 750,754 + metH MCAODC_03740 0.14 -0.2 750,754 + metH MCAODC_03740 0.14 +2.2 750,755 - metH MCAODC_03740 0.14 +0.7 750,802 + metH MCAODC_03740 0.15 -0.1 750,802 + metH MCAODC_03740 0.15 -1.6 750,802 + metH MCAODC_03740 0.15 +1.3 750,802 + metH MCAODC_03740 0.15 -0.1 750,802 + metH MCAODC_03740 0.15 -0.6 750,802 + metH MCAODC_03740 0.15 -0.5 750,884 - metH MCAODC_03740 0.17 -1.1 750,963 + metH MCAODC_03740 0.20 +0.2 750,963 + metH MCAODC_03740 0.20 +0.7 750,964 - metH MCAODC_03740 0.20 -0.8 750,968 + metH MCAODC_03740 0.20 +0.5 750,969 - metH MCAODC_03740 0.20 +0.4 750,993 - metH MCAODC_03740 0.20 +0.5
Or see this region's nucleotide sequence