Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ubiA and ubiC are separated by 12 nucleotides ubiC and espX4 are separated by 222 nucleotides espX4 and malM are separated by 228 nucleotides
MCAODC_03580: ubiA - 4-hydroxybenzoate octaprenyltransferase, at 717,841 to 718,713
ubiA
MCAODC_03585: ubiC - chorismate lyase, at 718,726 to 719,223
ubiC
MCAODC_03590: espX4 - Type III secretion system effector EspX4, at 719,446 to 721,026
espX4
MCAODC_03595: malM - maltose operon protein MalM, at 721,255 to 722,175
malM
Position (kb) 719
720
721
722 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 718.728 kb on - strand at 718.731 kb on - strand at 718.731 kb on - strand at 718.731 kb on - strand at 718.763 kb on - strand at 718.850 kb on - strand, within ubiC at 718.872 kb on - strand, within ubiC at 718.872 kb on - strand, within ubiC at 718.872 kb on - strand, within ubiC at 718.880 kb on - strand, within ubiC at 718.891 kb on - strand, within ubiC at 718.925 kb on - strand, within ubiC at 718.925 kb on - strand, within ubiC at 718.948 kb on - strand, within ubiC at 718.982 kb on - strand, within ubiC at 718.997 kb on - strand, within ubiC at 719.178 kb on + strand at 719.184 kb on - strand at 719.184 kb on - strand at 719.184 kb on - strand at 719.184 kb on - strand at 719.239 kb on - strand at 719.243 kb on - strand at 719.243 kb on - strand at 719.247 kb on + strand at 719.247 kb on + strand at 719.248 kb on - strand at 719.248 kb on - strand at 719.248 kb on - strand at 719.258 kb on + strand at 719.275 kb on + strand at 719.286 kb on + strand at 719.286 kb on + strand at 719.286 kb on + strand at 719.297 kb on - strand at 719.360 kb on + strand at 719.361 kb on - strand at 719.361 kb on - strand at 719.447 kb on + strand at 719.447 kb on + strand at 719.447 kb on + strand at 719.458 kb on - strand at 719.467 kb on - strand at 719.472 kb on + strand at 719.473 kb on - strand at 719.514 kb on + strand at 719.514 kb on + strand at 719.585 kb on + strand at 719.585 kb on + strand at 719.586 kb on - strand at 719.586 kb on - strand at 719.586 kb on - strand at 719.586 kb on - strand at 719.589 kb on + strand at 719.590 kb on - strand at 719.590 kb on - strand at 719.591 kb on + strand at 719.591 kb on + strand at 719.591 kb on + strand at 719.591 kb on + strand at 719.591 kb on + strand at 719.592 kb on - strand at 719.592 kb on - strand at 719.592 kb on - strand at 719.592 kb on - strand at 719.619 kb on + strand, within espX4 at 719.631 kb on + strand, within espX4 at 719.631 kb on + strand, within espX4 at 719.631 kb on + strand, within espX4 at 719.632 kb on - strand, within espX4 at 719.638 kb on + strand, within espX4 at 719.639 kb on - strand, within espX4 at 719.662 kb on - strand, within espX4 at 719.662 kb on - strand, within espX4 at 719.799 kb on + strand, within espX4 at 720.015 kb on + strand, within espX4 at 720.021 kb on + strand, within espX4 at 720.045 kb on - strand, within espX4 at 720.250 kb on + strand, within espX4 at 720.251 kb on - strand, within espX4 at 720.280 kb on - strand, within espX4 at 720.392 kb on + strand, within espX4 at 720.398 kb on + strand, within espX4 at 720.453 kb on + strand, within espX4 at 720.453 kb on + strand, within espX4 at 720.481 kb on - strand, within espX4 at 720.545 kb on - strand, within espX4 at 720.647 kb on - strand, within espX4 at 720.930 kb on + strand at 721.177 kb on + strand at 721.252 kb on + strand at 721.256 kb on + strand at 721.270 kb on + strand at 721.270 kb on + strand at 721.345 kb on - strand at 721.387 kb on - strand, within malM at 721.510 kb on + strand, within malM at 721.510 kb on + strand, within malM at 721.510 kb on + strand, within malM at 721.510 kb on + strand, within malM at 721.579 kb on - strand, within malM at 721.617 kb on + strand, within malM at 721.634 kb on + strand, within malM at 721.634 kb on + strand, within malM at 721.794 kb on - strand, within malM at 721.929 kb on - strand, within malM at 722.005 kb on - strand, within malM at 722.005 kb on - strand, within malM
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 718,728 - -0.3 718,731 - +0.9 718,731 - +0.4 718,731 - +0.8 718,763 - +0.6 718,850 - ubiC MCAODC_03585 0.25 -0.4 718,872 - ubiC MCAODC_03585 0.29 -0.1 718,872 - ubiC MCAODC_03585 0.29 -0.2 718,872 - ubiC MCAODC_03585 0.29 -0.1 718,880 - ubiC MCAODC_03585 0.31 -1.7 718,891 - ubiC MCAODC_03585 0.33 -0.7 718,925 - ubiC MCAODC_03585 0.40 -0.5 718,925 - ubiC MCAODC_03585 0.40 -0.1 718,948 - ubiC MCAODC_03585 0.45 -0.6 718,982 - ubiC MCAODC_03585 0.51 -0.3 718,997 - ubiC MCAODC_03585 0.54 +0.1 719,178 + +0.4 719,184 - +0.6 719,184 - -0.3 719,184 - -0.0 719,184 - +0.3 719,239 - -0.8 719,243 - -0.5 719,243 - +1.0 719,247 + -0.3 719,247 + +3.0 719,248 - +0.0 719,248 - +0.8 719,248 - -0.2 719,258 + +0.0 719,275 + -0.2 719,286 + +1.0 719,286 + -3.6 719,286 + -2.2 719,297 - -0.4 719,360 + +0.6 719,361 - +2.1 719,361 - +0.6 719,447 + +1.4 719,447 + -0.4 719,447 + +0.0 719,458 - -0.9 719,467 - +1.5 719,472 + +0.0 719,473 - +1.2 719,514 + -1.5 719,514 + +0.9 719,585 + -0.0 719,585 + -1.7 719,586 - +0.7 719,586 - +0.4 719,586 - -1.5 719,586 - +2.4 719,589 + +1.1 719,590 - +1.1 719,590 - -0.1 719,591 + -0.4 719,591 + +0.9 719,591 + -0.0 719,591 + -1.5 719,591 + +1.3 719,592 - -0.0 719,592 - +0.3 719,592 - +1.7 719,592 - -0.0 719,619 + espX4 MCAODC_03590 0.11 +0.1 719,631 + espX4 MCAODC_03590 0.12 -0.8 719,631 + espX4 MCAODC_03590 0.12 -2.3 719,631 + espX4 MCAODC_03590 0.12 +0.7 719,632 - espX4 MCAODC_03590 0.12 +0.4 719,638 + espX4 MCAODC_03590 0.12 -1.4 719,639 - espX4 MCAODC_03590 0.12 -0.7 719,662 - espX4 MCAODC_03590 0.14 +0.5 719,662 - espX4 MCAODC_03590 0.14 +1.1 719,799 + espX4 MCAODC_03590 0.22 +1.1 720,015 + espX4 MCAODC_03590 0.36 -1.5 720,021 + espX4 MCAODC_03590 0.36 +0.6 720,045 - espX4 MCAODC_03590 0.38 +0.6 720,250 + espX4 MCAODC_03590 0.51 +2.2 720,251 - espX4 MCAODC_03590 0.51 +2.3 720,280 - espX4 MCAODC_03590 0.53 -0.8 720,392 + espX4 MCAODC_03590 0.60 -1.2 720,398 + espX4 MCAODC_03590 0.60 +0.6 720,453 + espX4 MCAODC_03590 0.64 -0.1 720,453 + espX4 MCAODC_03590 0.64 +0.3 720,481 - espX4 MCAODC_03590 0.65 +1.1 720,545 - espX4 MCAODC_03590 0.70 -2.6 720,647 - espX4 MCAODC_03590 0.76 -1.2 720,930 + -0.2 721,177 + +0.6 721,252 + +0.3 721,256 + -0.6 721,270 + +0.2 721,270 + +0.2 721,345 - -0.1 721,387 - malM MCAODC_03595 0.14 +0.9 721,510 + malM MCAODC_03595 0.28 +0.9 721,510 + malM MCAODC_03595 0.28 -0.1 721,510 + malM MCAODC_03595 0.28 +1.8 721,510 + malM MCAODC_03595 0.28 +0.1 721,579 - malM MCAODC_03595 0.35 -0.1 721,617 + malM MCAODC_03595 0.39 -0.2 721,634 + malM MCAODC_03595 0.41 +0.0 721,634 + malM MCAODC_03595 0.41 +0.7 721,794 - malM MCAODC_03595 0.59 +0.5 721,929 - malM MCAODC_03595 0.73 -0.1 722,005 - malM MCAODC_03595 0.81 -0.5 722,005 - malM MCAODC_03595 0.81 -1.7
Or see this region's nucleotide sequence