Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MCAODC_03540 and MCAODC_03545 are separated by 612 nucleotides MCAODC_03545 and zur are separated by 311 nucleotides zur and yjbJ are separated by 41 nucleotides
MCAODC_03540: MCAODC_03540 - hypothetical protein, at 709,312 to 709,845
_03540
MCAODC_03545: MCAODC_03545 - DUF2713 domain-containing protein, at 710,458 to 711,414
_03545
MCAODC_03550: zur - zinc uptake transcriptional repressor Zur, at 711,726 to 712,241
zur
MCAODC_03555: yjbJ - UPF0337 protein YjbJ, at 712,283 to 712,492
yjbJ
Position (kb) 710
711
712 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 709.468 kb on - strand, within MCAODC_03540 at 709.468 kb on - strand, within MCAODC_03540 at 709.475 kb on - strand, within MCAODC_03540 at 709.476 kb on + strand, within MCAODC_03540 at 709.489 kb on - strand, within MCAODC_03540 at 709.489 kb on - strand, within MCAODC_03540 at 709.498 kb on + strand, within MCAODC_03540 at 709.557 kb on + strand, within MCAODC_03540 at 709.557 kb on + strand, within MCAODC_03540 at 709.557 kb on + strand, within MCAODC_03540 at 709.558 kb on - strand, within MCAODC_03540 at 709.558 kb on - strand, within MCAODC_03540 at 709.661 kb on + strand, within MCAODC_03540 at 709.662 kb on - strand, within MCAODC_03540 at 709.682 kb on + strand, within MCAODC_03540 at 709.686 kb on + strand, within MCAODC_03540 at 709.686 kb on + strand, within MCAODC_03540 at 709.686 kb on + strand, within MCAODC_03540 at 709.686 kb on + strand, within MCAODC_03540 at 709.686 kb on + strand, within MCAODC_03540 at 709.686 kb on + strand, within MCAODC_03540 at 709.686 kb on + strand, within MCAODC_03540 at 709.686 kb on + strand, within MCAODC_03540 at 709.687 kb on - strand, within MCAODC_03540 at 709.687 kb on - strand, within MCAODC_03540 at 709.687 kb on - strand, within MCAODC_03540 at 709.687 kb on - strand, within MCAODC_03540 at 709.687 kb on - strand, within MCAODC_03540 at 709.687 kb on - strand, within MCAODC_03540 at 709.687 kb on - strand, within MCAODC_03540 at 709.687 kb on - strand, within MCAODC_03540 at 709.690 kb on + strand, within MCAODC_03540 at 709.690 kb on + strand, within MCAODC_03540 at 709.691 kb on - strand, within MCAODC_03540 at 709.691 kb on - strand, within MCAODC_03540 at 709.697 kb on + strand, within MCAODC_03540 at 709.698 kb on - strand, within MCAODC_03540 at 709.698 kb on - strand, within MCAODC_03540 at 709.739 kb on + strand, within MCAODC_03540 at 709.740 kb on - strand, within MCAODC_03540 at 709.740 kb on - strand, within MCAODC_03540 at 709.774 kb on + strand, within MCAODC_03540 at 709.775 kb on - strand, within MCAODC_03540 at 709.803 kb on + strand at 709.809 kb on + strand at 709.810 kb on - strand at 709.810 kb on - strand at 709.810 kb on - strand at 709.814 kb on - strand at 709.825 kb on + strand at 709.825 kb on + strand at 709.825 kb on + strand at 709.869 kb on - strand at 709.869 kb on - strand at 709.880 kb on + strand at 709.880 kb on + strand at 709.880 kb on + strand at 709.880 kb on + strand at 709.880 kb on + strand at 709.881 kb on - strand at 709.881 kb on - strand at 709.881 kb on - strand at 709.881 kb on - strand at 709.881 kb on - strand at 709.881 kb on - strand at 709.881 kb on - strand at 709.882 kb on + strand at 709.882 kb on + strand at 709.909 kb on + strand at 709.910 kb on - strand at 709.956 kb on + strand at 709.957 kb on - strand at 709.958 kb on + strand at 709.960 kb on + strand at 709.984 kb on + strand at 710.182 kb on + strand at 710.182 kb on + strand at 710.183 kb on - strand at 710.183 kb on - strand at 710.183 kb on - strand at 710.183 kb on - strand at 710.183 kb on - strand at 710.183 kb on - strand at 710.183 kb on - strand at 710.183 kb on - strand at 710.184 kb on + strand at 710.190 kb on - strand at 710.265 kb on + strand at 710.269 kb on + strand at 710.269 kb on + strand at 710.269 kb on + strand at 710.270 kb on - strand at 710.270 kb on - strand at 710.276 kb on - strand at 710.359 kb on - strand at 710.601 kb on + strand, within MCAODC_03545 at 710.644 kb on - strand, within MCAODC_03545 at 710.652 kb on - strand, within MCAODC_03545 at 710.705 kb on + strand, within MCAODC_03545 at 710.715 kb on + strand, within MCAODC_03545 at 710.905 kb on + strand, within MCAODC_03545 at 710.906 kb on - strand, within MCAODC_03545 at 710.940 kb on + strand, within MCAODC_03545 at 710.947 kb on - strand, within MCAODC_03545 at 710.962 kb on + strand, within MCAODC_03545 at 711.019 kb on + strand, within MCAODC_03545 at 711.020 kb on - strand, within MCAODC_03545 at 711.057 kb on + strand, within MCAODC_03545 at 711.061 kb on - strand, within MCAODC_03545 at 711.148 kb on - strand, within MCAODC_03545 at 711.247 kb on + strand, within MCAODC_03545 at 711.265 kb on - strand, within MCAODC_03545 at 711.384 kb on - strand at 711.403 kb on + strand at 711.451 kb on + strand at 711.476 kb on + strand at 711.514 kb on - strand at 711.576 kb on - strand at 711.579 kb on - strand at 711.595 kb on + strand at 711.596 kb on - strand at 711.623 kb on - strand at 711.752 kb on - strand at 711.752 kb on - strand at 711.754 kb on + strand at 711.755 kb on - strand at 711.785 kb on + strand, within zur at 711.786 kb on - strand, within zur at 711.858 kb on + strand, within zur at 711.859 kb on - strand, within zur at 711.859 kb on - strand, within zur at 711.978 kb on + strand, within zur at 711.978 kb on + strand, within zur at 711.978 kb on + strand, within zur at 711.978 kb on + strand, within zur at 711.978 kb on + strand, within zur at 711.979 kb on - strand, within zur at 711.979 kb on - strand, within zur at 712.014 kb on - strand, within zur at 712.022 kb on + strand, within zur at 712.022 kb on + strand, within zur at 712.022 kb on + strand, within zur at 712.022 kb on + strand, within zur at 712.022 kb on + strand, within zur at 712.023 kb on - strand, within zur at 712.023 kb on - strand, within zur at 712.023 kb on - strand, within zur at 712.023 kb on - strand, within zur at 712.029 kb on - strand, within zur at 712.029 kb on - strand, within zur at 712.091 kb on + strand, within zur at 712.091 kb on + strand, within zur at 712.092 kb on - strand, within zur at 712.127 kb on + strand, within zur at 712.128 kb on - strand, within zur at 712.249 kb on + strand at 712.249 kb on + strand at 712.249 kb on + strand at 712.250 kb on - strand at 712.250 kb on - strand at 712.250 kb on - strand at 712.250 kb on - strand at 712.250 kb on - strand at 712.250 kb on - strand at 712.250 kb on - strand at 712.250 kb on - strand at 712.259 kb on + strand at 712.259 kb on + strand at 712.260 kb on - strand at 712.260 kb on - strand at 712.260 kb on - strand at 712.281 kb on - strand at 712.281 kb on - strand at 712.281 kb on - strand at 712.284 kb on + strand at 712.293 kb on + strand at 712.294 kb on - strand at 712.353 kb on + strand, within yjbJ at 712.370 kb on - strand, within yjbJ at 712.391 kb on - strand, within yjbJ at 712.391 kb on - strand, within yjbJ at 712.408 kb on + strand, within yjbJ at 712.408 kb on + strand, within yjbJ at 712.409 kb on - strand, within yjbJ at 712.409 kb on - strand, within yjbJ
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 709,468 - MCAODC_03540 0.29 +0.3 709,468 - MCAODC_03540 0.29 +0.9 709,475 - MCAODC_03540 0.31 +0.3 709,476 + MCAODC_03540 0.31 -1.7 709,489 - MCAODC_03540 0.33 -0.0 709,489 - MCAODC_03540 0.33 +2.1 709,498 + MCAODC_03540 0.35 +1.4 709,557 + MCAODC_03540 0.46 +0.0 709,557 + MCAODC_03540 0.46 +0.6 709,557 + MCAODC_03540 0.46 +0.7 709,558 - MCAODC_03540 0.46 -0.2 709,558 - MCAODC_03540 0.46 -2.5 709,661 + MCAODC_03540 0.65 -1.5 709,662 - MCAODC_03540 0.66 +0.8 709,682 + MCAODC_03540 0.69 -0.6 709,686 + MCAODC_03540 0.70 +0.4 709,686 + MCAODC_03540 0.70 +0.0 709,686 + MCAODC_03540 0.70 -0.5 709,686 + MCAODC_03540 0.70 -2.7 709,686 + MCAODC_03540 0.70 +0.6 709,686 + MCAODC_03540 0.70 +0.2 709,686 + MCAODC_03540 0.70 -0.2 709,686 + MCAODC_03540 0.70 -2.7 709,687 - MCAODC_03540 0.70 +0.7 709,687 - MCAODC_03540 0.70 -0.0 709,687 - MCAODC_03540 0.70 -0.1 709,687 - MCAODC_03540 0.70 +1.6 709,687 - MCAODC_03540 0.70 +0.1 709,687 - MCAODC_03540 0.70 +0.4 709,687 - MCAODC_03540 0.70 +0.3 709,687 - MCAODC_03540 0.70 -0.4 709,690 + MCAODC_03540 0.71 -0.3 709,690 + MCAODC_03540 0.71 -0.9 709,691 - MCAODC_03540 0.71 -1.4 709,691 - MCAODC_03540 0.71 +2.6 709,697 + MCAODC_03540 0.72 +0.8 709,698 - MCAODC_03540 0.72 +0.5 709,698 - MCAODC_03540 0.72 +1.0 709,739 + MCAODC_03540 0.80 -1.3 709,740 - MCAODC_03540 0.80 +1.4 709,740 - MCAODC_03540 0.80 -0.4 709,774 + MCAODC_03540 0.87 +0.8 709,775 - MCAODC_03540 0.87 +0.3 709,803 + -0.2 709,809 + +0.1 709,810 - -0.1 709,810 - -0.3 709,810 - +0.2 709,814 - -0.8 709,825 + -0.5 709,825 + -1.2 709,825 + +0.9 709,869 - +0.2 709,869 - +0.6 709,880 + -0.1 709,880 + +0.7 709,880 + +1.7 709,880 + +1.0 709,880 + +0.3 709,881 - -3.7 709,881 - -0.3 709,881 - -0.8 709,881 - +0.1 709,881 - +0.4 709,881 - +0.9 709,881 - +2.0 709,882 + -0.1 709,882 + -1.8 709,909 + -1.2 709,910 - -2.2 709,956 + +0.0 709,957 - +2.4 709,958 + +0.1 709,960 + -2.3 709,984 + +2.4 710,182 + -1.5 710,182 + -0.4 710,183 - +0.6 710,183 - -0.1 710,183 - -1.2 710,183 - -0.1 710,183 - +0.1 710,183 - -1.1 710,183 - +0.0 710,183 - +0.3 710,184 + +0.1 710,190 - +0.0 710,265 + +1.4 710,269 + -0.9 710,269 + +1.0 710,269 + -0.3 710,270 - +1.1 710,270 - +0.8 710,276 - +0.2 710,359 - +0.7 710,601 + MCAODC_03545 0.15 +1.2 710,644 - MCAODC_03545 0.19 +1.7 710,652 - MCAODC_03545 0.20 -0.5 710,705 + MCAODC_03545 0.26 -1.1 710,715 + MCAODC_03545 0.27 -2.2 710,905 + MCAODC_03545 0.47 -2.8 710,906 - MCAODC_03545 0.47 +0.8 710,940 + MCAODC_03545 0.50 -1.7 710,947 - MCAODC_03545 0.51 +0.7 710,962 + MCAODC_03545 0.53 +0.2 711,019 + MCAODC_03545 0.59 +0.6 711,020 - MCAODC_03545 0.59 +1.0 711,057 + MCAODC_03545 0.63 +0.0 711,061 - MCAODC_03545 0.63 +1.1 711,148 - MCAODC_03545 0.72 +1.4 711,247 + MCAODC_03545 0.82 +0.3 711,265 - MCAODC_03545 0.84 -0.5 711,384 - -0.7 711,403 + +0.2 711,451 + +0.4 711,476 + +1.2 711,514 - +0.6 711,576 - +0.1 711,579 - +1.2 711,595 + +0.1 711,596 - -0.0 711,623 - -0.9 711,752 - +0.7 711,752 - +0.1 711,754 + +0.5 711,755 - -1.6 711,785 + zur MCAODC_03550 0.11 -2.3 711,786 - zur MCAODC_03550 0.12 +0.7 711,858 + zur MCAODC_03550 0.26 -1.1 711,859 - zur MCAODC_03550 0.26 -1.8 711,859 - zur MCAODC_03550 0.26 -1.9 711,978 + zur MCAODC_03550 0.49 -1.9 711,978 + zur MCAODC_03550 0.49 -0.2 711,978 + zur MCAODC_03550 0.49 +2.4 711,978 + zur MCAODC_03550 0.49 +0.1 711,978 + zur MCAODC_03550 0.49 +0.2 711,979 - zur MCAODC_03550 0.49 -0.8 711,979 - zur MCAODC_03550 0.49 -0.2 712,014 - zur MCAODC_03550 0.56 -1.2 712,022 + zur MCAODC_03550 0.57 -0.0 712,022 + zur MCAODC_03550 0.57 -1.6 712,022 + zur MCAODC_03550 0.57 -0.4 712,022 + zur MCAODC_03550 0.57 -2.8 712,022 + zur MCAODC_03550 0.57 +0.8 712,023 - zur MCAODC_03550 0.58 -0.2 712,023 - zur MCAODC_03550 0.58 -1.4 712,023 - zur MCAODC_03550 0.58 -0.6 712,023 - zur MCAODC_03550 0.58 +0.1 712,029 - zur MCAODC_03550 0.59 -0.3 712,029 - zur MCAODC_03550 0.59 -1.2 712,091 + zur MCAODC_03550 0.71 -0.1 712,091 + zur MCAODC_03550 0.71 +0.5 712,092 - zur MCAODC_03550 0.71 -0.2 712,127 + zur MCAODC_03550 0.78 -0.3 712,128 - zur MCAODC_03550 0.78 -0.3 712,249 + +0.1 712,249 + +0.7 712,249 + +2.0 712,250 - -1.6 712,250 - +0.1 712,250 - +0.7 712,250 - -0.8 712,250 - +0.3 712,250 - -1.4 712,250 - -0.5 712,250 - +0.5 712,259 + +0.3 712,259 + -2.8 712,260 - -0.2 712,260 - -0.0 712,260 - +0.4 712,281 - +0.1 712,281 - +0.7 712,281 - +1.1 712,284 + -1.2 712,293 + +1.2 712,294 - -0.5 712,353 + yjbJ MCAODC_03555 0.33 -1.2 712,370 - yjbJ MCAODC_03555 0.41 +0.1 712,391 - yjbJ MCAODC_03555 0.51 +1.9 712,391 - yjbJ MCAODC_03555 0.51 -2.6 712,408 + yjbJ MCAODC_03555 0.60 +0.3 712,408 + yjbJ MCAODC_03555 0.60 -2.4 712,409 - yjbJ MCAODC_03555 0.60 -1.0 712,409 - yjbJ MCAODC_03555 0.60 +0.1
Or see this region's nucleotide sequence