Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt phnK and phnL are separated by 110 nucleotides phnL and phnM overlap by 4 nucleotides phnM and phnN overlap by 1 nucleotides phnN and phnO overlap by 4 nucleotides phnO and phnP are separated by 1 nucleotides
MCAODC_03180: phnK - phosphonate C-P lyase system protein PhnK, at 640,446 to 641,204
phnK
MCAODC_03185: phnL - phosphonate C-P lyase system protein PhnL, at 641,315 to 641,995
phnL
MCAODC_03190: phnM - alpha-D-ribose 1-methylphosphonate 5-triphosphate diphosphatase, at 641,992 to 643,128
phnM
MCAODC_03195: phnN - ribose 1,5-bisphosphokinase, at 643,128 to 643,685
phnN
MCAODC_03200: phnO - aminoalkylphosphonate N-acetyltransferase, at 643,682 to 644,107
phnO
MCAODC_03205: phnP - phosphonate metabolism protein PhnP, at 644,109 to 644,867
phnP
Position (kb) 641
642
643
644 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 641.042 kb on - strand, within phnK at 641.168 kb on + strand at 641.168 kb on + strand at 641.168 kb on + strand at 641.169 kb on - strand at 641.169 kb on - strand at 641.225 kb on - strand at 641.260 kb on - strand at 641.260 kb on - strand at 641.269 kb on - strand at 641.269 kb on - strand at 641.320 kb on + strand at 641.326 kb on - strand at 641.326 kb on - strand at 641.326 kb on - strand at 641.326 kb on - strand at 641.339 kb on - strand at 641.339 kb on - strand at 641.339 kb on - strand at 641.486 kb on + strand, within phnL at 641.486 kb on + strand, within phnL at 641.486 kb on + strand, within phnL at 641.486 kb on + strand, within phnL at 641.487 kb on - strand, within phnL at 641.487 kb on - strand, within phnL at 641.487 kb on - strand, within phnL at 641.536 kb on - strand, within phnL at 641.643 kb on + strand, within phnL at 641.644 kb on - strand, within phnL at 641.644 kb on - strand, within phnL at 641.646 kb on + strand, within phnL at 641.646 kb on + strand, within phnL at 641.647 kb on - strand, within phnL at 641.647 kb on - strand, within phnL at 641.647 kb on - strand, within phnL at 641.647 kb on - strand, within phnL at 641.806 kb on + strand, within phnL at 641.843 kb on - strand, within phnL at 641.946 kb on + strand at 641.950 kb on + strand at 641.950 kb on + strand at 641.950 kb on + strand at 641.950 kb on + strand at 641.950 kb on + strand at 641.950 kb on + strand at 641.950 kb on + strand at 641.950 kb on + strand at 641.951 kb on - strand at 641.951 kb on - strand at 641.951 kb on - strand at 641.951 kb on - strand at 641.951 kb on - strand at 641.951 kb on - strand at 641.951 kb on - strand at 642.003 kb on + strand at 642.036 kb on - strand at 642.156 kb on + strand, within phnM at 642.156 kb on + strand, within phnM at 642.156 kb on + strand, within phnM at 642.156 kb on + strand, within phnM at 642.157 kb on - strand, within phnM at 642.157 kb on - strand, within phnM at 642.157 kb on - strand, within phnM at 642.157 kb on - strand, within phnM at 642.172 kb on - strand, within phnM at 642.415 kb on - strand, within phnM at 642.524 kb on - strand, within phnM at 642.533 kb on - strand, within phnM at 642.547 kb on + strand, within phnM at 642.577 kb on + strand, within phnM at 642.577 kb on + strand, within phnM at 642.577 kb on + strand, within phnM at 642.578 kb on - strand, within phnM at 642.578 kb on - strand, within phnM at 642.578 kb on - strand, within phnM at 642.578 kb on - strand, within phnM at 642.810 kb on + strand, within phnM at 642.811 kb on - strand, within phnM at 642.895 kb on + strand, within phnM at 642.896 kb on - strand, within phnM at 642.896 kb on - strand, within phnM at 642.896 kb on - strand, within phnM at 643.009 kb on - strand, within phnM at 643.090 kb on - strand at 643.219 kb on + strand, within phnN at 643.220 kb on - strand, within phnN at 643.236 kb on + strand, within phnN at 643.353 kb on + strand, within phnN at 643.353 kb on + strand, within phnN at 643.353 kb on + strand, within phnN at 643.353 kb on + strand, within phnN at 643.353 kb on + strand, within phnN at 643.356 kb on + strand, within phnN at 643.357 kb on - strand, within phnN at 643.452 kb on + strand, within phnN at 643.453 kb on - strand, within phnN at 643.547 kb on + strand, within phnN at 643.575 kb on + strand, within phnN at 643.575 kb on + strand, within phnN at 643.577 kb on + strand, within phnN at 643.577 kb on + strand, within phnN at 643.578 kb on - strand, within phnN at 643.578 kb on - strand, within phnN at 643.596 kb on - strand, within phnN at 643.724 kb on + strand at 643.744 kb on - strand, within phnO at 643.744 kb on - strand, within phnO at 643.744 kb on - strand, within phnO at 643.924 kb on - strand, within phnO at 643.957 kb on + strand, within phnO at 643.957 kb on + strand, within phnO at 643.963 kb on - strand, within phnO at 644.055 kb on - strand, within phnO at 644.105 kb on + strand at 644.105 kb on + strand at 644.105 kb on + strand at 644.105 kb on + strand at 644.105 kb on + strand at 644.106 kb on - strand at 644.106 kb on - strand at 644.106 kb on - strand at 644.106 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 641,042 - phnK MCAODC_03180 0.79 -0.6 641,168 + -1.4 641,168 + -1.7 641,168 + +1.6 641,169 - -3.4 641,169 - +0.2 641,225 - -0.1 641,260 - +0.8 641,260 - +4.1 641,269 - +1.7 641,269 - +0.9 641,320 + -1.7 641,326 - -2.8 641,326 - -2.7 641,326 - +0.4 641,326 - -1.5 641,339 - +1.0 641,339 - -1.4 641,339 - +1.2 641,486 + phnL MCAODC_03185 0.25 +0.3 641,486 + phnL MCAODC_03185 0.25 -0.2 641,486 + phnL MCAODC_03185 0.25 +0.2 641,486 + phnL MCAODC_03185 0.25 -1.3 641,487 - phnL MCAODC_03185 0.25 +0.6 641,487 - phnL MCAODC_03185 0.25 +0.5 641,487 - phnL MCAODC_03185 0.25 +0.3 641,536 - phnL MCAODC_03185 0.32 -0.5 641,643 + phnL MCAODC_03185 0.48 -1.2 641,644 - phnL MCAODC_03185 0.48 -0.9 641,644 - phnL MCAODC_03185 0.48 +2.4 641,646 + phnL MCAODC_03185 0.49 +0.1 641,646 + phnL MCAODC_03185 0.49 -0.3 641,647 - phnL MCAODC_03185 0.49 +0.1 641,647 - phnL MCAODC_03185 0.49 +0.9 641,647 - phnL MCAODC_03185 0.49 -0.4 641,647 - phnL MCAODC_03185 0.49 -0.6 641,806 + phnL MCAODC_03185 0.72 +0.3 641,843 - phnL MCAODC_03185 0.78 +0.9 641,946 + +1.9 641,950 + +0.1 641,950 + +0.9 641,950 + +0.5 641,950 + +1.5 641,950 + +0.1 641,950 + -0.1 641,950 + -0.9 641,950 + -1.5 641,951 - -0.2 641,951 - +0.6 641,951 - -0.1 641,951 - +1.2 641,951 - -1.9 641,951 - -2.1 641,951 - -0.1 642,003 + -1.6 642,036 - +1.2 642,156 + phnM MCAODC_03190 0.14 -0.5 642,156 + phnM MCAODC_03190 0.14 +1.3 642,156 + phnM MCAODC_03190 0.14 +0.5 642,156 + phnM MCAODC_03190 0.14 +0.5 642,157 - phnM MCAODC_03190 0.15 -0.8 642,157 - phnM MCAODC_03190 0.15 +1.3 642,157 - phnM MCAODC_03190 0.15 -1.0 642,157 - phnM MCAODC_03190 0.15 -0.1 642,172 - phnM MCAODC_03190 0.16 -0.7 642,415 - phnM MCAODC_03190 0.37 -0.2 642,524 - phnM MCAODC_03190 0.47 -0.5 642,533 - phnM MCAODC_03190 0.48 +0.7 642,547 + phnM MCAODC_03190 0.49 +0.3 642,577 + phnM MCAODC_03190 0.51 -0.5 642,577 + phnM MCAODC_03190 0.51 +1.6 642,577 + phnM MCAODC_03190 0.51 +0.4 642,578 - phnM MCAODC_03190 0.52 -0.2 642,578 - phnM MCAODC_03190 0.52 +0.3 642,578 - phnM MCAODC_03190 0.52 +1.4 642,578 - phnM MCAODC_03190 0.52 -0.5 642,810 + phnM MCAODC_03190 0.72 +0.5 642,811 - phnM MCAODC_03190 0.72 -0.7 642,895 + phnM MCAODC_03190 0.79 -0.3 642,896 - phnM MCAODC_03190 0.80 +0.3 642,896 - phnM MCAODC_03190 0.80 -0.9 642,896 - phnM MCAODC_03190 0.80 +1.1 643,009 - phnM MCAODC_03190 0.89 -0.5 643,090 - +0.8 643,219 + phnN MCAODC_03195 0.16 +0.2 643,220 - phnN MCAODC_03195 0.16 +1.0 643,236 + phnN MCAODC_03195 0.19 -0.5 643,353 + phnN MCAODC_03195 0.40 +0.5 643,353 + phnN MCAODC_03195 0.40 +1.6 643,353 + phnN MCAODC_03195 0.40 -0.1 643,353 + phnN MCAODC_03195 0.40 +1.2 643,353 + phnN MCAODC_03195 0.40 +0.7 643,356 + phnN MCAODC_03195 0.41 -0.1 643,357 - phnN MCAODC_03195 0.41 -2.4 643,452 + phnN MCAODC_03195 0.58 -2.8 643,453 - phnN MCAODC_03195 0.58 -1.4 643,547 + phnN MCAODC_03195 0.75 -0.8 643,575 + phnN MCAODC_03195 0.80 -0.7 643,575 + phnN MCAODC_03195 0.80 -1.0 643,577 + phnN MCAODC_03195 0.80 -0.4 643,577 + phnN MCAODC_03195 0.80 -3.1 643,578 - phnN MCAODC_03195 0.81 +0.2 643,578 - phnN MCAODC_03195 0.81 -0.9 643,596 - phnN MCAODC_03195 0.84 -0.3 643,724 + -1.2 643,744 - phnO MCAODC_03200 0.15 -2.2 643,744 - phnO MCAODC_03200 0.15 +0.8 643,744 - phnO MCAODC_03200 0.15 -0.5 643,924 - phnO MCAODC_03200 0.57 +0.7 643,957 + phnO MCAODC_03200 0.65 +0.1 643,957 + phnO MCAODC_03200 0.65 +0.2 643,963 - phnO MCAODC_03200 0.66 +0.1 644,055 - phnO MCAODC_03200 0.88 -0.2 644,105 + -0.8 644,105 + -2.2 644,105 + -2.0 644,105 + +0.4 644,105 + -0.6 644,106 - -0.7 644,106 - -1.0 644,106 - -1.3 644,106 - -0.6
Or see this region's nucleotide sequence