Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yjeH and fxsA overlap by 180 nucleotides fxsA and aspA are separated by 336 nucleotides aspA and MCAODC_02945 are separated by 36 nucleotides MCAODC_02945 and dcuA are separated by 51 nucleotides
MCAODC_02930: yjeH - L-methionine/branched-chain amino acid transporter, at 589,202 to 590,653
yjeH
MCAODC_02935: fxsA - membrane protein FxsA, at 590,474 to 590,950
fxsA
MCAODC_02940: aspA - aspartate ammonia-lyase, at 591,287 to 592,723
aspA
MCAODC_02945: MCAODC_02945 - URF 1, at 592,760 to 592,789
_02945
MCAODC_02950: dcuA - anaerobic C4-dicarboxylate transporter DcuA, at 592,841 to 594,142
dcuA
Position (kb) 591
592
593 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 590.290 kb on + strand, within yjeH at 590.291 kb on - strand, within yjeH at 590.316 kb on + strand, within yjeH at 590.340 kb on + strand, within yjeH at 590.340 kb on + strand, within yjeH at 590.340 kb on + strand, within yjeH at 590.353 kb on - strand, within yjeH at 590.381 kb on + strand, within yjeH at 590.381 kb on + strand, within yjeH at 590.382 kb on - strand, within yjeH at 590.382 kb on - strand, within yjeH at 590.406 kb on + strand, within yjeH at 590.475 kb on + strand at 590.475 kb on + strand at 590.476 kb on - strand at 590.476 kb on - strand at 590.476 kb on - strand at 590.549 kb on - strand at 590.552 kb on - strand at 590.732 kb on - strand, within fxsA at 590.732 kb on - strand, within fxsA at 590.806 kb on + strand, within fxsA at 590.806 kb on + strand, within fxsA at 590.806 kb on + strand, within fxsA at 590.821 kb on + strand, within fxsA at 590.841 kb on - strand, within fxsA at 590.864 kb on + strand, within fxsA at 590.874 kb on - strand, within fxsA at 590.874 kb on - strand, within fxsA at 590.874 kb on - strand, within fxsA at 590.874 kb on - strand, within fxsA at 590.910 kb on + strand at 590.910 kb on + strand at 590.910 kb on + strand at 590.910 kb on + strand at 590.910 kb on + strand at 590.916 kb on + strand at 590.916 kb on + strand at 590.917 kb on - strand at 590.963 kb on + strand at 590.963 kb on + strand at 590.964 kb on - strand at 590.964 kb on - strand at 590.966 kb on + strand at 591.018 kb on + strand at 591.019 kb on - strand at 591.019 kb on - strand at 591.019 kb on - strand at 591.020 kb on + strand at 591.020 kb on + strand at 591.020 kb on + strand at 591.021 kb on - strand at 591.021 kb on - strand at 591.021 kb on - strand at 591.032 kb on + strand at 591.106 kb on + strand at 591.110 kb on + strand at 591.110 kb on + strand at 591.111 kb on - strand at 591.131 kb on + strand at 591.132 kb on - strand at 591.132 kb on - strand at 591.152 kb on - strand at 591.170 kb on + strand at 591.170 kb on + strand at 591.170 kb on + strand at 591.170 kb on + strand at 591.170 kb on + strand at 591.171 kb on - strand at 591.234 kb on + strand at 591.236 kb on + strand at 591.236 kb on + strand at 591.236 kb on + strand at 591.237 kb on - strand at 591.237 kb on - strand at 591.350 kb on + strand at 591.350 kb on + strand at 591.351 kb on - strand at 591.351 kb on - strand at 591.351 kb on - strand at 591.351 kb on - strand at 591.351 kb on - strand at 591.351 kb on - strand at 591.354 kb on - strand at 591.354 kb on - strand at 591.354 kb on - strand at 591.389 kb on + strand at 591.389 kb on + strand at 591.389 kb on + strand at 591.389 kb on + strand at 591.415 kb on + strand at 591.415 kb on + strand at 591.416 kb on - strand at 591.464 kb on - strand, within aspA at 591.493 kb on + strand, within aspA at 591.493 kb on + strand, within aspA at 591.494 kb on - strand, within aspA at 591.494 kb on - strand, within aspA at 591.494 kb on - strand, within aspA at 591.595 kb on + strand, within aspA at 591.595 kb on + strand, within aspA at 591.595 kb on + strand, within aspA at 591.672 kb on - strand, within aspA at 591.755 kb on + strand, within aspA at 591.755 kb on + strand, within aspA at 591.755 kb on + strand, within aspA at 591.769 kb on + strand, within aspA at 591.777 kb on + strand, within aspA at 591.777 kb on + strand, within aspA at 591.777 kb on + strand, within aspA at 591.778 kb on - strand, within aspA at 591.778 kb on - strand, within aspA at 591.778 kb on - strand, within aspA at 591.946 kb on + strand, within aspA at 591.946 kb on + strand, within aspA at 591.947 kb on - strand, within aspA at 591.971 kb on - strand, within aspA at 592.019 kb on + strand, within aspA at 592.115 kb on + strand, within aspA at 592.115 kb on + strand, within aspA at 592.116 kb on - strand, within aspA at 592.116 kb on - strand, within aspA at 592.116 kb on - strand, within aspA at 592.120 kb on + strand, within aspA at 592.121 kb on - strand, within aspA at 592.121 kb on - strand, within aspA at 592.121 kb on - strand, within aspA at 592.121 kb on - strand, within aspA at 592.265 kb on - strand, within aspA at 592.265 kb on - strand, within aspA at 592.269 kb on + strand, within aspA at 592.270 kb on - strand, within aspA at 592.270 kb on - strand, within aspA at 592.302 kb on + strand, within aspA at 592.302 kb on + strand, within aspA at 592.302 kb on + strand, within aspA at 592.303 kb on - strand, within aspA at 592.303 kb on - strand, within aspA at 592.303 kb on - strand, within aspA at 592.337 kb on - strand, within aspA at 592.376 kb on - strand, within aspA at 592.376 kb on - strand, within aspA at 592.400 kb on - strand, within aspA at 592.400 kb on - strand, within aspA at 592.400 kb on - strand, within aspA at 592.400 kb on - strand, within aspA at 592.400 kb on - strand, within aspA at 592.400 kb on - strand, within aspA at 592.400 kb on - strand, within aspA at 592.400 kb on - strand, within aspA at 592.436 kb on + strand, within aspA at 592.436 kb on + strand, within aspA at 592.437 kb on - strand, within aspA at 592.437 kb on - strand, within aspA at 592.496 kb on + strand, within aspA at 592.503 kb on - strand, within aspA at 592.503 kb on - strand, within aspA at 592.510 kb on + strand, within aspA at 592.522 kb on + strand, within aspA at 592.522 kb on + strand, within aspA at 592.522 kb on + strand, within aspA at 592.523 kb on - strand, within aspA at 592.523 kb on - strand, within aspA at 592.526 kb on + strand, within aspA at 592.526 kb on + strand, within aspA at 592.526 kb on + strand, within aspA at 592.599 kb on + strand at 592.599 kb on + strand at 592.651 kb on + strand at 592.663 kb on - strand at 592.685 kb on + strand at 592.700 kb on + strand at 592.700 kb on + strand at 592.701 kb on - strand at 592.702 kb on + strand at 592.703 kb on - strand at 592.728 kb on - strand at 592.735 kb on - strand at 592.737 kb on + strand at 592.737 kb on + strand at 592.737 kb on + strand at 592.738 kb on - strand at 592.738 kb on - strand at 592.738 kb on - strand at 592.738 kb on - strand at 592.738 kb on - strand at 592.744 kb on - strand at 592.806 kb on + strand at 592.840 kb on + strand at 592.840 kb on + strand at 592.840 kb on + strand at 592.840 kb on + strand at 592.841 kb on - strand at 592.845 kb on + strand at 592.845 kb on + strand at 592.845 kb on + strand at 592.845 kb on + strand at 592.845 kb on + strand at 592.845 kb on + strand at 592.845 kb on + strand at 592.846 kb on - strand at 592.846 kb on - strand at 592.846 kb on - strand at 592.846 kb on - strand at 592.846 kb on - strand at 592.846 kb on - strand at 592.846 kb on - strand at 592.846 kb on - strand at 592.846 kb on - strand at 592.851 kb on + strand at 592.852 kb on - strand at 592.864 kb on - strand at 592.905 kb on + strand at 592.905 kb on + strand at 592.905 kb on + strand at 592.906 kb on - strand at 592.906 kb on - strand at 592.906 kb on - strand at 592.906 kb on - strand at 592.909 kb on + strand at 592.909 kb on + strand at 592.910 kb on - strand at 592.996 kb on + strand, within dcuA at 593.017 kb on + strand, within dcuA at 593.052 kb on - strand, within dcuA at 593.052 kb on - strand, within dcuA at 593.096 kb on + strand, within dcuA at 593.097 kb on - strand, within dcuA at 593.126 kb on + strand, within dcuA at 593.126 kb on + strand, within dcuA at 593.126 kb on + strand, within dcuA at 593.127 kb on - strand, within dcuA at 593.127 kb on - strand, within dcuA at 593.182 kb on + strand, within dcuA at 593.233 kb on + strand, within dcuA at 593.234 kb on - strand, within dcuA at 593.234 kb on - strand, within dcuA at 593.294 kb on + strand, within dcuA at 593.294 kb on + strand, within dcuA at 593.294 kb on + strand, within dcuA at 593.294 kb on + strand, within dcuA at 593.294 kb on + strand, within dcuA at 593.294 kb on + strand, within dcuA at 593.295 kb on - strand, within dcuA at 593.295 kb on - strand, within dcuA at 593.295 kb on - strand, within dcuA at 593.331 kb on - strand, within dcuA at 593.401 kb on + strand, within dcuA at 593.402 kb on - strand, within dcuA at 593.402 kb on - strand, within dcuA at 593.402 kb on - strand, within dcuA at 593.402 kb on - strand, within dcuA at 593.402 kb on - strand, within dcuA at 593.402 kb on - strand, within dcuA at 593.438 kb on + strand, within dcuA at 593.541 kb on + strand, within dcuA at 593.541 kb on + strand, within dcuA at 593.541 kb on + strand, within dcuA at 593.542 kb on - strand, within dcuA at 593.542 kb on - strand, within dcuA at 593.554 kb on + strand, within dcuA at 593.554 kb on + strand, within dcuA at 593.554 kb on + strand, within dcuA at 593.554 kb on + strand, within dcuA at 593.555 kb on - strand, within dcuA at 593.558 kb on + strand, within dcuA at 593.558 kb on + strand, within dcuA at 593.559 kb on - strand, within dcuA at 593.559 kb on - strand, within dcuA at 593.559 kb on - strand, within dcuA at 593.559 kb on - strand, within dcuA at 593.559 kb on - strand, within dcuA at 593.559 kb on - strand, within dcuA at 593.666 kb on - strand, within dcuA
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 590,290 + yjeH MCAODC_02930 0.75 -1.0 590,291 - yjeH MCAODC_02930 0.75 -0.1 590,316 + yjeH MCAODC_02930 0.77 -2.5 590,340 + yjeH MCAODC_02930 0.78 -1.1 590,340 + yjeH MCAODC_02930 0.78 -0.1 590,340 + yjeH MCAODC_02930 0.78 +0.3 590,353 - yjeH MCAODC_02930 0.79 -2.8 590,381 + yjeH MCAODC_02930 0.81 -0.6 590,381 + yjeH MCAODC_02930 0.81 -0.4 590,382 - yjeH MCAODC_02930 0.81 +0.3 590,382 - yjeH MCAODC_02930 0.81 -1.6 590,406 + yjeH MCAODC_02930 0.83 +0.1 590,475 + -1.1 590,475 + -0.2 590,476 - +1.6 590,476 - +1.5 590,476 - +1.1 590,549 - -1.8 590,552 - +2.2 590,732 - fxsA MCAODC_02935 0.54 +1.6 590,732 - fxsA MCAODC_02935 0.54 +3.5 590,806 + fxsA MCAODC_02935 0.70 +0.5 590,806 + fxsA MCAODC_02935 0.70 +0.9 590,806 + fxsA MCAODC_02935 0.70 +3.2 590,821 + fxsA MCAODC_02935 0.73 -0.8 590,841 - fxsA MCAODC_02935 0.77 -1.3 590,864 + fxsA MCAODC_02935 0.82 +1.3 590,874 - fxsA MCAODC_02935 0.84 -1.7 590,874 - fxsA MCAODC_02935 0.84 +0.6 590,874 - fxsA MCAODC_02935 0.84 +1.4 590,874 - fxsA MCAODC_02935 0.84 -0.4 590,910 + -1.2 590,910 + -0.5 590,910 + +1.4 590,910 + +2.8 590,910 + -0.7 590,916 + -2.5 590,916 + +1.8 590,917 - +0.1 590,963 + -3.0 590,963 + +0.9 590,964 - -1.7 590,964 - +0.6 590,966 + +0.0 591,018 + +0.9 591,019 - -0.9 591,019 - -0.3 591,019 - +0.9 591,020 + +0.5 591,020 + +1.4 591,020 + +0.4 591,021 - +1.1 591,021 - -1.2 591,021 - +0.2 591,032 + +0.5 591,106 + -4.4 591,110 + +0.9 591,110 + -0.2 591,111 - -0.8 591,131 + -0.8 591,132 - +0.6 591,132 - -0.3 591,152 - +0.3 591,170 + -0.4 591,170 + -0.2 591,170 + +0.2 591,170 + +0.2 591,170 + -0.1 591,171 - +0.4 591,234 + +0.4 591,236 + +0.3 591,236 + -1.3 591,236 + -1.4 591,237 - -1.2 591,237 - -1.0 591,350 + -0.4 591,350 + -0.3 591,351 - +1.7 591,351 - +0.2 591,351 - -0.2 591,351 - -1.3 591,351 - -2.6 591,351 - -0.7 591,354 - +0.3 591,354 - -1.6 591,354 - -0.9 591,389 + -0.6 591,389 + -0.8 591,389 + -0.3 591,389 + -1.0 591,415 + -1.7 591,415 + -2.3 591,416 - +0.9 591,464 - aspA MCAODC_02940 0.12 +2.2 591,493 + aspA MCAODC_02940 0.14 +1.4 591,493 + aspA MCAODC_02940 0.14 -0.3 591,494 - aspA MCAODC_02940 0.14 +1.7 591,494 - aspA MCAODC_02940 0.14 -1.5 591,494 - aspA MCAODC_02940 0.14 +0.1 591,595 + aspA MCAODC_02940 0.21 +0.0 591,595 + aspA MCAODC_02940 0.21 -1.8 591,595 + aspA MCAODC_02940 0.21 -2.2 591,672 - aspA MCAODC_02940 0.27 +0.7 591,755 + aspA MCAODC_02940 0.33 +0.4 591,755 + aspA MCAODC_02940 0.33 +0.9 591,755 + aspA MCAODC_02940 0.33 -0.5 591,769 + aspA MCAODC_02940 0.34 +0.2 591,777 + aspA MCAODC_02940 0.34 +1.4 591,777 + aspA MCAODC_02940 0.34 +2.2 591,777 + aspA MCAODC_02940 0.34 -1.6 591,778 - aspA MCAODC_02940 0.34 -0.7 591,778 - aspA MCAODC_02940 0.34 +1.2 591,778 - aspA MCAODC_02940 0.34 -1.1 591,946 + aspA MCAODC_02940 0.46 +0.6 591,946 + aspA MCAODC_02940 0.46 -0.6 591,947 - aspA MCAODC_02940 0.46 +1.7 591,971 - aspA MCAODC_02940 0.48 +0.6 592,019 + aspA MCAODC_02940 0.51 -0.4 592,115 + aspA MCAODC_02940 0.58 -0.4 592,115 + aspA MCAODC_02940 0.58 +0.4 592,116 - aspA MCAODC_02940 0.58 +1.7 592,116 - aspA MCAODC_02940 0.58 -0.3 592,116 - aspA MCAODC_02940 0.58 -1.6 592,120 + aspA MCAODC_02940 0.58 -3.9 592,121 - aspA MCAODC_02940 0.58 +0.4 592,121 - aspA MCAODC_02940 0.58 +1.8 592,121 - aspA MCAODC_02940 0.58 +1.4 592,121 - aspA MCAODC_02940 0.58 -0.1 592,265 - aspA MCAODC_02940 0.68 +0.3 592,265 - aspA MCAODC_02940 0.68 +0.3 592,269 + aspA MCAODC_02940 0.68 +0.9 592,270 - aspA MCAODC_02940 0.68 +0.7 592,270 - aspA MCAODC_02940 0.68 +0.3 592,302 + aspA MCAODC_02940 0.71 -0.7 592,302 + aspA MCAODC_02940 0.71 -0.8 592,302 + aspA MCAODC_02940 0.71 -3.5 592,303 - aspA MCAODC_02940 0.71 +1.1 592,303 - aspA MCAODC_02940 0.71 +0.6 592,303 - aspA MCAODC_02940 0.71 +0.7 592,337 - aspA MCAODC_02940 0.73 +0.0 592,376 - aspA MCAODC_02940 0.76 -0.3 592,376 - aspA MCAODC_02940 0.76 +0.5 592,400 - aspA MCAODC_02940 0.77 +0.2 592,400 - aspA MCAODC_02940 0.77 -0.0 592,400 - aspA MCAODC_02940 0.77 +0.2 592,400 - aspA MCAODC_02940 0.77 +0.2 592,400 - aspA MCAODC_02940 0.77 +0.7 592,400 - aspA MCAODC_02940 0.77 +0.1 592,400 - aspA MCAODC_02940 0.77 -0.5 592,400 - aspA MCAODC_02940 0.77 -0.5 592,436 + aspA MCAODC_02940 0.80 +0.8 592,436 + aspA MCAODC_02940 0.80 +0.3 592,437 - aspA MCAODC_02940 0.80 -0.2 592,437 - aspA MCAODC_02940 0.80 -0.1 592,496 + aspA MCAODC_02940 0.84 +0.2 592,503 - aspA MCAODC_02940 0.85 +0.5 592,503 - aspA MCAODC_02940 0.85 -2.9 592,510 + aspA MCAODC_02940 0.85 -1.1 592,522 + aspA MCAODC_02940 0.86 -2.1 592,522 + aspA MCAODC_02940 0.86 -0.1 592,522 + aspA MCAODC_02940 0.86 -2.1 592,523 - aspA MCAODC_02940 0.86 +0.4 592,523 - aspA MCAODC_02940 0.86 +1.3 592,526 + aspA MCAODC_02940 0.86 -0.2 592,526 + aspA MCAODC_02940 0.86 -2.0 592,526 + aspA MCAODC_02940 0.86 +1.1 592,599 + -1.1 592,599 + +0.1 592,651 + -0.8 592,663 - -2.4 592,685 + -0.5 592,700 + +0.7 592,700 + -1.0 592,701 - +0.3 592,702 + -0.3 592,703 - +0.9 592,728 - +0.0 592,735 - -0.1 592,737 + +0.3 592,737 + +0.5 592,737 + -0.3 592,738 - +0.3 592,738 - -0.7 592,738 - +0.3 592,738 - +0.7 592,738 - -0.2 592,744 - +0.1 592,806 + +1.5 592,840 + -0.2 592,840 + +1.3 592,840 + +0.7 592,840 + +0.5 592,841 - -0.7 592,845 + -0.1 592,845 + +0.2 592,845 + +0.1 592,845 + -0.3 592,845 + +0.2 592,845 + -0.3 592,845 + +0.2 592,846 - +1.1 592,846 - +1.3 592,846 - +0.9 592,846 - -1.6 592,846 - +0.5 592,846 - +1.5 592,846 - +0.4 592,846 - -1.0 592,846 - +0.4 592,851 + -0.0 592,852 - -0.9 592,864 - -3.4 592,905 + -0.0 592,905 + -0.1 592,905 + +0.5 592,906 - -2.4 592,906 - -1.2 592,906 - -0.3 592,906 - +0.9 592,909 + -1.1 592,909 + -1.6 592,910 - +0.4 592,996 + dcuA MCAODC_02950 0.12 +1.3 593,017 + dcuA MCAODC_02950 0.14 -3.0 593,052 - dcuA MCAODC_02950 0.16 +0.8 593,052 - dcuA MCAODC_02950 0.16 -2.6 593,096 + dcuA MCAODC_02950 0.20 +0.9 593,097 - dcuA MCAODC_02950 0.20 +0.5 593,126 + dcuA MCAODC_02950 0.22 -0.4 593,126 + dcuA MCAODC_02950 0.22 +0.9 593,126 + dcuA MCAODC_02950 0.22 -1.2 593,127 - dcuA MCAODC_02950 0.22 +0.7 593,127 - dcuA MCAODC_02950 0.22 +0.6 593,182 + dcuA MCAODC_02950 0.26 -0.2 593,233 + dcuA MCAODC_02950 0.30 +1.8 593,234 - dcuA MCAODC_02950 0.30 -0.0 593,234 - dcuA MCAODC_02950 0.30 +0.3 593,294 + dcuA MCAODC_02950 0.35 +0.9 593,294 + dcuA MCAODC_02950 0.35 -1.6 593,294 + dcuA MCAODC_02950 0.35 -1.3 593,294 + dcuA MCAODC_02950 0.35 +0.6 593,294 + dcuA MCAODC_02950 0.35 +0.8 593,294 + dcuA MCAODC_02950 0.35 +0.5 593,295 - dcuA MCAODC_02950 0.35 -0.9 593,295 - dcuA MCAODC_02950 0.35 +0.2 593,295 - dcuA MCAODC_02950 0.35 -1.9 593,331 - dcuA MCAODC_02950 0.38 +0.2 593,401 + dcuA MCAODC_02950 0.43 +0.3 593,402 - dcuA MCAODC_02950 0.43 +0.4 593,402 - dcuA MCAODC_02950 0.43 +1.5 593,402 - dcuA MCAODC_02950 0.43 +0.7 593,402 - dcuA MCAODC_02950 0.43 -3.9 593,402 - dcuA MCAODC_02950 0.43 +0.8 593,402 - dcuA MCAODC_02950 0.43 -0.0 593,438 + dcuA MCAODC_02950 0.46 -1.8 593,541 + dcuA MCAODC_02950 0.54 -0.2 593,541 + dcuA MCAODC_02950 0.54 -0.9 593,541 + dcuA MCAODC_02950 0.54 +1.1 593,542 - dcuA MCAODC_02950 0.54 -1.0 593,542 - dcuA MCAODC_02950 0.54 -0.8 593,554 + dcuA MCAODC_02950 0.55 -0.4 593,554 + dcuA MCAODC_02950 0.55 +0.3 593,554 + dcuA MCAODC_02950 0.55 -1.9 593,554 + dcuA MCAODC_02950 0.55 +0.9 593,555 - dcuA MCAODC_02950 0.55 -0.7 593,558 + dcuA MCAODC_02950 0.55 +1.5 593,558 + dcuA MCAODC_02950 0.55 +0.4 593,559 - dcuA MCAODC_02950 0.55 -1.7 593,559 - dcuA MCAODC_02950 0.55 -0.2 593,559 - dcuA MCAODC_02950 0.55 -2.0 593,559 - dcuA MCAODC_02950 0.55 -0.3 593,559 - dcuA MCAODC_02950 0.55 +0.7 593,559 - dcuA MCAODC_02950 0.55 -1.4 593,666 - dcuA MCAODC_02950 0.63 +1.6
Or see this region's nucleotide sequence