Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt bdcR and bdcA are separated by 70 nucleotides bdcA and ridA are separated by 130 nucleotides ridA and pyrB are separated by 418 nucleotides
MCAODC_02355: bdcR - HTH-type transcriptional repressor BdcR, at 483,827 to 484,420
bdcR
MCAODC_02360: bdcA - SDR family oxidoreductase, at 484,491 to 485,204
bdcA
MCAODC_02365: ridA - Endoribonuclease L-PSP, at 485,335 to 485,730
ridA
MCAODC_02370: pyrB - aspartate carbamoyltransferase, at 486,149 to 487,084
pyrB
Position (kb) 485
486 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1
2
3 at 484.444 kb on + strand at 484.445 kb on - strand at 484.467 kb on + strand at 484.502 kb on + strand at 484.508 kb on + strand at 484.509 kb on - strand at 484.558 kb on + strand at 484.558 kb on + strand at 484.558 kb on + strand at 484.558 kb on + strand at 484.559 kb on - strand at 484.559 kb on - strand at 484.559 kb on - strand at 484.588 kb on + strand, within bdcA at 484.588 kb on + strand, within bdcA at 484.588 kb on + strand, within bdcA at 484.589 kb on - strand, within bdcA at 484.589 kb on - strand, within bdcA at 484.589 kb on - strand, within bdcA at 484.599 kb on + strand, within bdcA at 484.657 kb on + strand, within bdcA at 484.658 kb on - strand, within bdcA at 484.658 kb on - strand, within bdcA at 484.658 kb on - strand, within bdcA at 484.658 kb on - strand, within bdcA at 484.658 kb on - strand, within bdcA at 484.661 kb on + strand, within bdcA at 484.661 kb on + strand, within bdcA at 484.667 kb on + strand, within bdcA at 484.667 kb on + strand, within bdcA at 484.667 kb on + strand, within bdcA at 484.668 kb on - strand, within bdcA at 484.668 kb on - strand, within bdcA at 484.733 kb on - strand, within bdcA at 484.733 kb on - strand, within bdcA at 484.733 kb on - strand, within bdcA at 484.743 kb on - strand, within bdcA at 484.785 kb on - strand, within bdcA at 484.821 kb on + strand, within bdcA at 484.873 kb on + strand, within bdcA at 484.874 kb on - strand, within bdcA at 484.901 kb on + strand, within bdcA at 484.902 kb on - strand, within bdcA at 484.902 kb on - strand, within bdcA at 484.902 kb on - strand, within bdcA at 484.926 kb on + strand, within bdcA at 484.927 kb on - strand, within bdcA at 484.949 kb on - strand, within bdcA at 485.075 kb on + strand, within bdcA at 485.075 kb on + strand, within bdcA at 485.076 kb on - strand, within bdcA at 485.081 kb on + strand, within bdcA at 485.081 kb on + strand, within bdcA at 485.082 kb on - strand, within bdcA at 485.087 kb on + strand, within bdcA at 485.137 kb on + strand at 485.177 kb on + strand at 485.177 kb on + strand at 485.178 kb on - strand at 485.210 kb on + strand at 485.273 kb on + strand at 485.289 kb on + strand at 485.290 kb on - strand at 485.293 kb on + strand at 485.295 kb on + strand at 485.295 kb on + strand at 485.296 kb on - strand at 485.315 kb on + strand at 485.406 kb on + strand, within ridA at 485.444 kb on + strand, within ridA at 485.444 kb on + strand, within ridA at 485.444 kb on + strand, within ridA at 485.445 kb on - strand, within ridA at 485.554 kb on - strand, within ridA at 485.566 kb on - strand, within ridA at 485.577 kb on + strand, within ridA at 485.627 kb on + strand, within ridA at 485.627 kb on + strand, within ridA at 485.645 kb on - strand, within ridA at 485.670 kb on + strand, within ridA at 485.670 kb on + strand, within ridA at 485.670 kb on + strand, within ridA at 485.670 kb on + strand, within ridA at 485.671 kb on - strand, within ridA at 485.671 kb on - strand, within ridA at 485.671 kb on - strand, within ridA at 485.671 kb on - strand, within ridA at 485.728 kb on + strand at 485.729 kb on - strand at 485.735 kb on + strand at 485.767 kb on + strand at 485.767 kb on + strand at 485.768 kb on - strand at 485.768 kb on - strand at 485.769 kb on + strand at 485.770 kb on - strand at 485.982 kb on + strand at 486.010 kb on + strand at 486.010 kb on + strand at 486.011 kb on - strand at 486.011 kb on - strand at 486.011 kb on - strand at 486.011 kb on - strand at 486.011 kb on - strand at 486.011 kb on - strand at 486.176 kb on - strand at 486.176 kb on - strand at 486.386 kb on - strand, within pyrB at 486.443 kb on + strand, within pyrB at 486.443 kb on + strand, within pyrB at 486.444 kb on - strand, within pyrB at 486.444 kb on - strand, within pyrB at 486.576 kb on + strand, within pyrB at 486.576 kb on + strand, within pyrB at 486.576 kb on + strand, within pyrB at 486.576 kb on + strand, within pyrB at 486.577 kb on - strand, within pyrB at 486.577 kb on - strand, within pyrB at 486.645 kb on - strand, within pyrB at 486.705 kb on - strand, within pyrB
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 484,444 + -0.9 484,445 - +0.4 484,467 + -0.6 484,502 + +2.1 484,508 + +1.3 484,509 - +0.9 484,558 + -0.4 484,558 + -0.2 484,558 + +1.5 484,558 + +0.7 484,559 - -0.2 484,559 - +0.0 484,559 - -2.1 484,588 + bdcA MCAODC_02360 0.14 +0.5 484,588 + bdcA MCAODC_02360 0.14 +0.7 484,588 + bdcA MCAODC_02360 0.14 -0.3 484,589 - bdcA MCAODC_02360 0.14 +1.0 484,589 - bdcA MCAODC_02360 0.14 -0.0 484,589 - bdcA MCAODC_02360 0.14 +0.6 484,599 + bdcA MCAODC_02360 0.15 +0.3 484,657 + bdcA MCAODC_02360 0.23 -0.8 484,658 - bdcA MCAODC_02360 0.23 +0.0 484,658 - bdcA MCAODC_02360 0.23 -2.2 484,658 - bdcA MCAODC_02360 0.23 +0.8 484,658 - bdcA MCAODC_02360 0.23 -3.8 484,658 - bdcA MCAODC_02360 0.23 -0.5 484,661 + bdcA MCAODC_02360 0.24 +1.1 484,661 + bdcA MCAODC_02360 0.24 -0.6 484,667 + bdcA MCAODC_02360 0.25 +0.7 484,667 + bdcA MCAODC_02360 0.25 +1.6 484,667 + bdcA MCAODC_02360 0.25 +0.9 484,668 - bdcA MCAODC_02360 0.25 -2.4 484,668 - bdcA MCAODC_02360 0.25 +0.8 484,733 - bdcA MCAODC_02360 0.34 -0.3 484,733 - bdcA MCAODC_02360 0.34 -0.1 484,733 - bdcA MCAODC_02360 0.34 -0.1 484,743 - bdcA MCAODC_02360 0.35 -0.2 484,785 - bdcA MCAODC_02360 0.41 +0.1 484,821 + bdcA MCAODC_02360 0.46 -0.5 484,873 + bdcA MCAODC_02360 0.54 +1.0 484,874 - bdcA MCAODC_02360 0.54 +0.1 484,901 + bdcA MCAODC_02360 0.57 +0.1 484,902 - bdcA MCAODC_02360 0.58 -0.9 484,902 - bdcA MCAODC_02360 0.58 +0.1 484,902 - bdcA MCAODC_02360 0.58 -0.6 484,926 + bdcA MCAODC_02360 0.61 +2.0 484,927 - bdcA MCAODC_02360 0.61 -1.1 484,949 - bdcA MCAODC_02360 0.64 +0.7 485,075 + bdcA MCAODC_02360 0.82 +0.7 485,075 + bdcA MCAODC_02360 0.82 +1.0 485,076 - bdcA MCAODC_02360 0.82 -0.7 485,081 + bdcA MCAODC_02360 0.83 -0.5 485,081 + bdcA MCAODC_02360 0.83 -0.6 485,082 - bdcA MCAODC_02360 0.83 -1.4 485,087 + bdcA MCAODC_02360 0.83 -0.3 485,137 + -1.5 485,177 + +0.4 485,177 + -0.4 485,178 - -0.2 485,210 + +1.4 485,273 + -0.1 485,289 + -1.1 485,290 - +2.9 485,293 + -0.7 485,295 + +0.1 485,295 + +0.1 485,296 - -0.0 485,315 + +0.9 485,406 + ridA MCAODC_02365 0.18 -0.2 485,444 + ridA MCAODC_02365 0.28 +0.3 485,444 + ridA MCAODC_02365 0.28 +0.2 485,444 + ridA MCAODC_02365 0.28 -2.3 485,445 - ridA MCAODC_02365 0.28 -0.4 485,554 - ridA MCAODC_02365 0.55 +0.6 485,566 - ridA MCAODC_02365 0.58 +0.5 485,577 + ridA MCAODC_02365 0.61 +0.3 485,627 + ridA MCAODC_02365 0.74 +0.8 485,627 + ridA MCAODC_02365 0.74 +1.0 485,645 - ridA MCAODC_02365 0.78 -2.3 485,670 + ridA MCAODC_02365 0.85 -1.1 485,670 + ridA MCAODC_02365 0.85 -0.2 485,670 + ridA MCAODC_02365 0.85 -0.2 485,670 + ridA MCAODC_02365 0.85 -0.0 485,671 - ridA MCAODC_02365 0.85 -0.2 485,671 - ridA MCAODC_02365 0.85 +0.6 485,671 - ridA MCAODC_02365 0.85 -0.2 485,671 - ridA MCAODC_02365 0.85 +0.8 485,728 + +1.3 485,729 - +1.6 485,735 + -0.5 485,767 + +0.2 485,767 + -1.1 485,768 - +0.3 485,768 - +0.8 485,769 + +0.2 485,770 - -0.2 485,982 + +0.0 486,010 + -0.5 486,010 + -0.8 486,011 - -2.1 486,011 - -0.7 486,011 - -3.0 486,011 - -5.1 486,011 - -2.7 486,011 - -4.3 486,176 - -2.6 486,176 - -6.6 486,386 - pyrB MCAODC_02370 0.25 -5.1 486,443 + pyrB MCAODC_02370 0.31 -3.4 486,443 + pyrB MCAODC_02370 0.31 -2.6 486,444 - pyrB MCAODC_02370 0.32 -3.8 486,444 - pyrB MCAODC_02370 0.32 -4.0 486,576 + pyrB MCAODC_02370 0.46 -4.0 486,576 + pyrB MCAODC_02370 0.46 -2.5 486,576 + pyrB MCAODC_02370 0.46 -2.1 486,576 + pyrB MCAODC_02370 0.46 -3.2 486,577 - pyrB MCAODC_02370 0.46 -1.0 486,577 - pyrB MCAODC_02370 0.46 -2.3 486,645 - pyrB MCAODC_02370 0.53 -1.6 486,705 - pyrB MCAODC_02370 0.59 -2.7
Or see this region's nucleotide sequence