Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt fimH and fimG are separated by 19 nucleotides fimG and fimF are separated by 12 nucleotides fimF and fimD are separated by 9 nucleotides
MCAODC_02090: fimH - type 1 fimbria D-mannose specific adhesin FimH, at 411,016 to 411,918
fimH
MCAODC_02095: fimG - FimG protein precursor, at 411,938 to 412,441
fimG
MCAODC_02100: fimF - type 1 fimbria minor subunit FimF, at 412,454 to 412,984
fimF
MCAODC_02105: fimD - fimbrial usher FimD, at 412,994 to 415,630
fimD
Position (kb) 412
413 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 411.469 kb on - strand, within fimH at 411.534 kb on - strand, within fimH at 411.570 kb on + strand, within fimH at 411.570 kb on + strand, within fimH at 411.572 kb on + strand, within fimH at 411.572 kb on + strand, within fimH at 411.572 kb on + strand, within fimH at 411.611 kb on + strand, within fimH at 411.611 kb on + strand, within fimH at 411.615 kb on + strand, within fimH at 411.615 kb on + strand, within fimH at 411.616 kb on - strand, within fimH at 411.624 kb on + strand, within fimH at 411.627 kb on - strand, within fimH at 411.632 kb on - strand, within fimH at 411.666 kb on - strand, within fimH at 411.692 kb on + strand, within fimH at 411.692 kb on + strand, within fimH at 411.692 kb on + strand, within fimH at 411.692 kb on + strand, within fimH at 411.794 kb on + strand, within fimH at 411.794 kb on + strand, within fimH at 411.869 kb on - strand at 411.889 kb on + strand at 411.890 kb on - strand at 411.903 kb on + strand at 411.904 kb on - strand at 411.904 kb on - strand at 411.906 kb on + strand at 411.906 kb on + strand at 411.907 kb on - strand at 411.920 kb on - strand at 411.945 kb on + strand at 411.945 kb on + strand at 411.946 kb on - strand at 411.946 kb on - strand at 411.949 kb on + strand at 411.950 kb on - strand at 411.950 kb on - strand at 411.950 kb on - strand at 411.951 kb on + strand at 411.951 kb on + strand at 411.951 kb on + strand at 411.951 kb on + strand at 411.951 kb on + strand at 411.951 kb on + strand at 411.951 kb on + strand at 411.952 kb on - strand at 411.952 kb on - strand at 411.952 kb on - strand at 411.952 kb on - strand at 411.952 kb on - strand at 411.952 kb on - strand at 411.952 kb on - strand at 411.962 kb on - strand at 412.110 kb on - strand, within fimG at 412.147 kb on + strand, within fimG at 412.147 kb on + strand, within fimG at 412.149 kb on + strand, within fimG at 412.150 kb on - strand, within fimG at 412.150 kb on - strand, within fimG at 412.152 kb on + strand, within fimG at 412.216 kb on + strand, within fimG at 412.216 kb on + strand, within fimG at 412.216 kb on + strand, within fimG at 412.345 kb on + strand, within fimG at 412.420 kb on - strand at 412.455 kb on + strand at 412.462 kb on - strand at 412.477 kb on + strand at 412.492 kb on + strand at 412.492 kb on + strand at 412.549 kb on + strand, within fimF at 412.549 kb on + strand, within fimF at 412.604 kb on - strand, within fimF at 412.640 kb on + strand, within fimF at 412.769 kb on - strand, within fimF at 412.807 kb on + strand, within fimF at 412.807 kb on + strand, within fimF at 412.870 kb on + strand, within fimF at 412.870 kb on + strand, within fimF at 412.871 kb on - strand, within fimF at 412.871 kb on - strand, within fimF at 412.903 kb on + strand, within fimF at 412.903 kb on + strand, within fimF at 412.904 kb on - strand, within fimF at 412.904 kb on - strand, within fimF at 412.904 kb on - strand, within fimF at 412.904 kb on - strand, within fimF at 412.904 kb on - strand, within fimF at 412.966 kb on - strand at 413.024 kb on + strand at 413.024 kb on + strand at 413.025 kb on - strand at 413.025 kb on - strand at 413.025 kb on - strand at 413.025 kb on - strand at 413.025 kb on - strand at 413.133 kb on + strand at 413.164 kb on + strand at 413.212 kb on + strand at 413.212 kb on + strand at 413.213 kb on - strand at 413.213 kb on - strand at 413.215 kb on + strand at 413.215 kb on + strand at 413.216 kb on - strand at 413.216 kb on - strand at 413.216 kb on - strand at 413.243 kb on + strand at 413.314 kb on + strand, within fimD at 413.318 kb on + strand, within fimD at 413.319 kb on - strand, within fimD at 413.319 kb on - strand, within fimD at 413.374 kb on - strand, within fimD at 413.385 kb on + strand, within fimD at 413.385 kb on + strand, within fimD at 413.386 kb on - strand, within fimD at 413.416 kb on + strand, within fimD at 413.550 kb on + strand, within fimD at 413.550 kb on + strand, within fimD at 413.560 kb on + strand, within fimD at 413.560 kb on + strand, within fimD at 413.560 kb on + strand, within fimD at 413.560 kb on + strand, within fimD at 413.561 kb on - strand, within fimD at 413.561 kb on - strand, within fimD at 413.561 kb on - strand, within fimD at 413.563 kb on + strand, within fimD at 413.563 kb on + strand, within fimD at 413.573 kb on - strand, within fimD at 413.629 kb on - strand, within fimD at 413.644 kb on + strand, within fimD at 413.645 kb on - strand, within fimD at 413.647 kb on + strand, within fimD at 413.647 kb on + strand, within fimD at 413.683 kb on + strand, within fimD at 413.685 kb on + strand, within fimD at 413.685 kb on + strand, within fimD at 413.685 kb on + strand, within fimD at 413.686 kb on - strand, within fimD at 413.686 kb on - strand, within fimD at 413.686 kb on - strand, within fimD at 413.713 kb on + strand, within fimD at 413.713 kb on + strand, within fimD at 413.714 kb on - strand, within fimD at 413.718 kb on + strand, within fimD at 413.719 kb on - strand, within fimD at 413.719 kb on - strand, within fimD at 413.720 kb on + strand, within fimD at 413.720 kb on + strand, within fimD at 413.721 kb on - strand, within fimD at 413.721 kb on - strand, within fimD at 413.769 kb on + strand, within fimD at 413.770 kb on - strand, within fimD at 413.834 kb on - strand, within fimD at 413.850 kb on - strand, within fimD at 413.896 kb on - strand, within fimD at 413.933 kb on + strand, within fimD at 413.933 kb on + strand, within fimD at 413.977 kb on - strand, within fimD
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 411,469 - fimH MCAODC_02090 0.50 +0.7 411,534 - fimH MCAODC_02090 0.57 -0.7 411,570 + fimH MCAODC_02090 0.61 +0.6 411,570 + fimH MCAODC_02090 0.61 +0.6 411,572 + fimH MCAODC_02090 0.62 +1.3 411,572 + fimH MCAODC_02090 0.62 +0.2 411,572 + fimH MCAODC_02090 0.62 -0.3 411,611 + fimH MCAODC_02090 0.66 +0.2 411,611 + fimH MCAODC_02090 0.66 +1.2 411,615 + fimH MCAODC_02090 0.66 -3.1 411,615 + fimH MCAODC_02090 0.66 +0.9 411,616 - fimH MCAODC_02090 0.66 +1.3 411,624 + fimH MCAODC_02090 0.67 -0.4 411,627 - fimH MCAODC_02090 0.68 -0.7 411,632 - fimH MCAODC_02090 0.68 -0.1 411,666 - fimH MCAODC_02090 0.72 +0.4 411,692 + fimH MCAODC_02090 0.75 +0.1 411,692 + fimH MCAODC_02090 0.75 +1.3 411,692 + fimH MCAODC_02090 0.75 +0.3 411,692 + fimH MCAODC_02090 0.75 +0.8 411,794 + fimH MCAODC_02090 0.86 +0.3 411,794 + fimH MCAODC_02090 0.86 -0.4 411,869 - +0.6 411,889 + +1.0 411,890 - -1.5 411,903 + +0.4 411,904 - +0.2 411,904 - +0.6 411,906 + -0.0 411,906 + +0.4 411,907 - +1.3 411,920 - +1.3 411,945 + +1.2 411,945 + -1.1 411,946 - +0.6 411,946 - +0.4 411,949 + -1.1 411,950 - -0.6 411,950 - -0.6 411,950 - -2.2 411,951 + -1.2 411,951 + -0.2 411,951 + +1.5 411,951 + -0.9 411,951 + +0.6 411,951 + +1.4 411,951 + -1.8 411,952 - +0.6 411,952 - -0.3 411,952 - -0.4 411,952 - +0.3 411,952 - -2.5 411,952 - -1.9 411,952 - -1.7 411,962 - +0.9 412,110 - fimG MCAODC_02095 0.34 +1.1 412,147 + fimG MCAODC_02095 0.41 +2.0 412,147 + fimG MCAODC_02095 0.41 -0.0 412,149 + fimG MCAODC_02095 0.42 -1.0 412,150 - fimG MCAODC_02095 0.42 -0.4 412,150 - fimG MCAODC_02095 0.42 +0.7 412,152 + fimG MCAODC_02095 0.42 -0.4 412,216 + fimG MCAODC_02095 0.55 -1.0 412,216 + fimG MCAODC_02095 0.55 -0.1 412,216 + fimG MCAODC_02095 0.55 +0.5 412,345 + fimG MCAODC_02095 0.81 +1.6 412,420 - -0.3 412,455 + -2.5 412,462 - -0.2 412,477 + -0.9 412,492 + +0.4 412,492 + -2.6 412,549 + fimF MCAODC_02100 0.18 -1.4 412,549 + fimF MCAODC_02100 0.18 +0.1 412,604 - fimF MCAODC_02100 0.28 +0.5 412,640 + fimF MCAODC_02100 0.35 +1.4 412,769 - fimF MCAODC_02100 0.59 -0.4 412,807 + fimF MCAODC_02100 0.66 +0.2 412,807 + fimF MCAODC_02100 0.66 -0.4 412,870 + fimF MCAODC_02100 0.78 -0.3 412,870 + fimF MCAODC_02100 0.78 +0.7 412,871 - fimF MCAODC_02100 0.79 +0.7 412,871 - fimF MCAODC_02100 0.79 +1.4 412,903 + fimF MCAODC_02100 0.85 +0.7 412,903 + fimF MCAODC_02100 0.85 +0.2 412,904 - fimF MCAODC_02100 0.85 +1.3 412,904 - fimF MCAODC_02100 0.85 +0.5 412,904 - fimF MCAODC_02100 0.85 +0.5 412,904 - fimF MCAODC_02100 0.85 +0.8 412,904 - fimF MCAODC_02100 0.85 +0.3 412,966 - -1.8 413,024 + -1.9 413,024 + -0.7 413,025 - +0.2 413,025 - -0.9 413,025 - -1.2 413,025 - +0.3 413,025 - -0.2 413,133 + -1.2 413,164 + -1.3 413,212 + +0.4 413,212 + +0.6 413,213 - +0.5 413,213 - -3.5 413,215 + -0.1 413,215 + +0.7 413,216 - -0.7 413,216 - +0.7 413,216 - -0.9 413,243 + -0.8 413,314 + fimD MCAODC_02105 0.12 +0.3 413,318 + fimD MCAODC_02105 0.12 +0.6 413,319 - fimD MCAODC_02105 0.12 +0.3 413,319 - fimD MCAODC_02105 0.12 +0.8 413,374 - fimD MCAODC_02105 0.14 -0.3 413,385 + fimD MCAODC_02105 0.15 +0.9 413,385 + fimD MCAODC_02105 0.15 -2.4 413,386 - fimD MCAODC_02105 0.15 +1.5 413,416 + fimD MCAODC_02105 0.16 +0.1 413,550 + fimD MCAODC_02105 0.21 +0.7 413,550 + fimD MCAODC_02105 0.21 -0.2 413,560 + fimD MCAODC_02105 0.21 +0.1 413,560 + fimD MCAODC_02105 0.21 +0.7 413,560 + fimD MCAODC_02105 0.21 -0.6 413,560 + fimD MCAODC_02105 0.21 -2.2 413,561 - fimD MCAODC_02105 0.22 +0.8 413,561 - fimD MCAODC_02105 0.22 -0.7 413,561 - fimD MCAODC_02105 0.22 +0.3 413,563 + fimD MCAODC_02105 0.22 -1.2 413,563 + fimD MCAODC_02105 0.22 +1.2 413,573 - fimD MCAODC_02105 0.22 -1.8 413,629 - fimD MCAODC_02105 0.24 +0.9 413,644 + fimD MCAODC_02105 0.25 -2.7 413,645 - fimD MCAODC_02105 0.25 +0.3 413,647 + fimD MCAODC_02105 0.25 +0.2 413,647 + fimD MCAODC_02105 0.25 -0.8 413,683 + fimD MCAODC_02105 0.26 -1.0 413,685 + fimD MCAODC_02105 0.26 -1.3 413,685 + fimD MCAODC_02105 0.26 -0.3 413,685 + fimD MCAODC_02105 0.26 +1.3 413,686 - fimD MCAODC_02105 0.26 +0.6 413,686 - fimD MCAODC_02105 0.26 +0.1 413,686 - fimD MCAODC_02105 0.26 -0.7 413,713 + fimD MCAODC_02105 0.27 -1.5 413,713 + fimD MCAODC_02105 0.27 +0.4 413,714 - fimD MCAODC_02105 0.27 -2.2 413,718 + fimD MCAODC_02105 0.27 -0.4 413,719 - fimD MCAODC_02105 0.27 +0.1 413,719 - fimD MCAODC_02105 0.27 +1.1 413,720 + fimD MCAODC_02105 0.28 +0.4 413,720 + fimD MCAODC_02105 0.28 +1.3 413,721 - fimD MCAODC_02105 0.28 +0.0 413,721 - fimD MCAODC_02105 0.28 -0.3 413,769 + fimD MCAODC_02105 0.29 -0.0 413,770 - fimD MCAODC_02105 0.29 -3.3 413,834 - fimD MCAODC_02105 0.32 +1.2 413,850 - fimD MCAODC_02105 0.32 -0.7 413,896 - fimD MCAODC_02105 0.34 +0.1 413,933 + fimD MCAODC_02105 0.36 -0.2 413,933 + fimD MCAODC_02105 0.36 -0.7 413,977 - fimD MCAODC_02105 0.37 -0.5
Or see this region's nucleotide sequence