Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yjjI and MCAODC_01755 are separated by 35 nucleotides MCAODC_01755 and yjjW overlap by 29 nucleotides yjjW and yjjV are separated by 213 nucleotides yjjV and yjjU overlap by 4 nucleotides
MCAODC_01750: yjjI - Glycine radical enzyme, YjjI family, at 340,734 to 342,002
yjjI
MCAODC_01755: MCAODC_01755 - Glycine radical enzyme, YjjI family, at 342,038 to 342,283
_01755
MCAODC_01760: yjjW - Putative glycyl-radical enzyme activating enzyme YjjW, at 342,255 to 343,118
yjjW
MCAODC_01775: yjjV - metal-dependent hydrolase, at 343,332 to 344,114
yjjV
MCAODC_01780: yjjU - Uncharacterized protein YjjU, at 344,111 to 345,184
yjjU
Position (kb) 342
343
344 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4 at 341.443 kb on - strand, within yjjI at 341.548 kb on + strand, within yjjI at 341.549 kb on - strand, within yjjI at 341.556 kb on + strand, within yjjI at 341.556 kb on + strand, within yjjI at 341.556 kb on + strand, within yjjI at 341.557 kb on - strand, within yjjI at 341.604 kb on + strand, within yjjI at 341.604 kb on + strand, within yjjI at 341.630 kb on + strand, within yjjI at 341.631 kb on - strand, within yjjI at 341.691 kb on + strand, within yjjI at 341.691 kb on + strand, within yjjI at 341.692 kb on - strand, within yjjI at 341.692 kb on - strand, within yjjI at 341.692 kb on - strand, within yjjI at 341.692 kb on - strand, within yjjI at 341.776 kb on + strand, within yjjI at 341.776 kb on + strand, within yjjI at 341.777 kb on - strand, within yjjI at 341.777 kb on - strand, within yjjI at 341.777 kb on - strand, within yjjI at 341.777 kb on - strand, within yjjI at 341.777 kb on - strand, within yjjI at 341.777 kb on - strand, within yjjI at 341.832 kb on + strand, within yjjI at 341.832 kb on + strand, within yjjI at 341.832 kb on + strand, within yjjI at 341.832 kb on + strand, within yjjI at 341.832 kb on + strand, within yjjI at 341.857 kb on + strand, within yjjI at 341.857 kb on + strand, within yjjI at 341.972 kb on + strand at 341.972 kb on + strand at 341.972 kb on + strand at 341.972 kb on + strand at 341.973 kb on - strand at 341.973 kb on - strand at 341.975 kb on + strand at 341.975 kb on + strand at 341.975 kb on + strand at 341.976 kb on - strand at 341.976 kb on - strand at 341.978 kb on + strand at 342.026 kb on - strand at 342.043 kb on - strand at 342.085 kb on + strand, within MCAODC_01755 at 342.128 kb on + strand, within MCAODC_01755 at 342.129 kb on - strand, within MCAODC_01755 at 342.129 kb on - strand, within MCAODC_01755 at 342.130 kb on + strand, within MCAODC_01755 at 342.130 kb on + strand, within MCAODC_01755 at 342.130 kb on + strand, within MCAODC_01755 at 342.130 kb on + strand, within MCAODC_01755 at 342.130 kb on + strand, within MCAODC_01755 at 342.130 kb on + strand, within MCAODC_01755 at 342.130 kb on + strand, within MCAODC_01755 at 342.130 kb on + strand, within MCAODC_01755 at 342.131 kb on - strand, within MCAODC_01755 at 342.131 kb on - strand, within MCAODC_01755 at 342.131 kb on - strand, within MCAODC_01755 at 342.131 kb on - strand, within MCAODC_01755 at 342.131 kb on - strand, within MCAODC_01755 at 342.249 kb on + strand, within MCAODC_01755 at 342.275 kb on - strand at 342.281 kb on + strand at 342.494 kb on + strand, within yjjW at 342.495 kb on - strand, within yjjW at 342.495 kb on - strand, within yjjW at 342.644 kb on - strand, within yjjW at 342.656 kb on + strand, within yjjW at 342.663 kb on - strand, within yjjW at 342.710 kb on + strand, within yjjW at 342.710 kb on + strand, within yjjW at 342.716 kb on + strand, within yjjW at 342.716 kb on + strand, within yjjW at 342.717 kb on - strand, within yjjW at 342.717 kb on - strand, within yjjW at 342.825 kb on - strand, within yjjW at 342.836 kb on + strand, within yjjW at 342.836 kb on + strand, within yjjW at 342.837 kb on - strand, within yjjW at 342.870 kb on - strand, within yjjW at 343.005 kb on + strand, within yjjW at 343.097 kb on - strand at 343.110 kb on + strand at 343.111 kb on - strand at 343.128 kb on + strand at 343.135 kb on + strand at 343.135 kb on + strand at 343.265 kb on + strand at 343.265 kb on + strand at 343.266 kb on - strand at 343.266 kb on - strand at 343.319 kb on + strand at 343.333 kb on + strand at 343.346 kb on + strand at 343.357 kb on + strand at 343.357 kb on + strand at 343.357 kb on + strand at 343.358 kb on - strand at 343.358 kb on - strand at 343.358 kb on - strand at 343.358 kb on - strand at 343.358 kb on - strand at 343.365 kb on - strand at 343.365 kb on - strand at 343.365 kb on - strand at 343.367 kb on + strand at 343.367 kb on + strand at 343.367 kb on + strand at 343.368 kb on - strand at 343.565 kb on - strand, within yjjV at 343.571 kb on + strand, within yjjV at 343.571 kb on + strand, within yjjV at 343.571 kb on + strand, within yjjV at 343.571 kb on + strand, within yjjV at 343.571 kb on + strand, within yjjV at 343.572 kb on - strand, within yjjV at 343.572 kb on - strand, within yjjV at 343.572 kb on - strand, within yjjV at 343.572 kb on - strand, within yjjV at 343.572 kb on - strand, within yjjV at 343.572 kb on - strand, within yjjV at 343.575 kb on - strand, within yjjV at 343.605 kb on + strand, within yjjV at 343.679 kb on + strand, within yjjV at 343.679 kb on + strand, within yjjV at 343.680 kb on - strand, within yjjV at 343.738 kb on + strand, within yjjV at 343.896 kb on - strand, within yjjV at 343.910 kb on + strand, within yjjV at 343.911 kb on - strand, within yjjV at 343.911 kb on - strand, within yjjV at 343.937 kb on - strand, within yjjV at 344.016 kb on + strand, within yjjV at 344.100 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 341,443 - yjjI MCAODC_01750 0.56 +1.2 341,548 + yjjI MCAODC_01750 0.64 -1.0 341,549 - yjjI MCAODC_01750 0.64 +0.0 341,556 + yjjI MCAODC_01750 0.65 -0.1 341,556 + yjjI MCAODC_01750 0.65 +0.4 341,556 + yjjI MCAODC_01750 0.65 +1.4 341,557 - yjjI MCAODC_01750 0.65 -0.3 341,604 + yjjI MCAODC_01750 0.69 -0.9 341,604 + yjjI MCAODC_01750 0.69 -0.5 341,630 + yjjI MCAODC_01750 0.71 +0.4 341,631 - yjjI MCAODC_01750 0.71 -0.7 341,691 + yjjI MCAODC_01750 0.75 +0.4 341,691 + yjjI MCAODC_01750 0.75 +0.2 341,692 - yjjI MCAODC_01750 0.75 +0.9 341,692 - yjjI MCAODC_01750 0.75 +2.6 341,692 - yjjI MCAODC_01750 0.75 +0.8 341,692 - yjjI MCAODC_01750 0.75 +0.2 341,776 + yjjI MCAODC_01750 0.82 -2.1 341,776 + yjjI MCAODC_01750 0.82 +1.7 341,777 - yjjI MCAODC_01750 0.82 +0.7 341,777 - yjjI MCAODC_01750 0.82 -0.0 341,777 - yjjI MCAODC_01750 0.82 +0.7 341,777 - yjjI MCAODC_01750 0.82 +0.3 341,777 - yjjI MCAODC_01750 0.82 -0.3 341,777 - yjjI MCAODC_01750 0.82 +0.2 341,832 + yjjI MCAODC_01750 0.87 +0.7 341,832 + yjjI MCAODC_01750 0.87 -3.6 341,832 + yjjI MCAODC_01750 0.87 -0.9 341,832 + yjjI MCAODC_01750 0.87 +0.9 341,832 + yjjI MCAODC_01750 0.87 +0.8 341,857 + yjjI MCAODC_01750 0.88 +0.6 341,857 + yjjI MCAODC_01750 0.88 -0.7 341,972 + +1.5 341,972 + -0.9 341,972 + +0.3 341,972 + +1.4 341,973 - +0.5 341,973 - +0.7 341,975 + -0.9 341,975 + -1.3 341,975 + +0.7 341,976 - +0.4 341,976 - +0.0 341,978 + -1.5 342,026 - -1.0 342,043 - +1.7 342,085 + MCAODC_01755 0.19 +0.0 342,128 + MCAODC_01755 0.37 +0.4 342,129 - MCAODC_01755 0.37 +0.0 342,129 - MCAODC_01755 0.37 -2.0 342,130 + MCAODC_01755 0.37 +0.4 342,130 + MCAODC_01755 0.37 -0.3 342,130 + MCAODC_01755 0.37 -1.3 342,130 + MCAODC_01755 0.37 +0.3 342,130 + MCAODC_01755 0.37 -1.0 342,130 + MCAODC_01755 0.37 -3.2 342,130 + MCAODC_01755 0.37 +1.3 342,130 + MCAODC_01755 0.37 +1.7 342,131 - MCAODC_01755 0.38 +0.2 342,131 - MCAODC_01755 0.38 -1.1 342,131 - MCAODC_01755 0.38 +4.0 342,131 - MCAODC_01755 0.38 -0.9 342,131 - MCAODC_01755 0.38 +1.8 342,249 + MCAODC_01755 0.86 +0.4 342,275 - -0.0 342,281 + -0.1 342,494 + yjjW MCAODC_01760 0.28 -2.0 342,495 - yjjW MCAODC_01760 0.28 +0.9 342,495 - yjjW MCAODC_01760 0.28 -0.9 342,644 - yjjW MCAODC_01760 0.45 -0.3 342,656 + yjjW MCAODC_01760 0.46 +1.3 342,663 - yjjW MCAODC_01760 0.47 -1.4 342,710 + yjjW MCAODC_01760 0.53 +1.2 342,710 + yjjW MCAODC_01760 0.53 +0.3 342,716 + yjjW MCAODC_01760 0.53 -1.0 342,716 + yjjW MCAODC_01760 0.53 +1.0 342,717 - yjjW MCAODC_01760 0.53 -1.4 342,717 - yjjW MCAODC_01760 0.53 -2.1 342,825 - yjjW MCAODC_01760 0.66 +0.3 342,836 + yjjW MCAODC_01760 0.67 +1.7 342,836 + yjjW MCAODC_01760 0.67 +1.6 342,837 - yjjW MCAODC_01760 0.67 +0.1 342,870 - yjjW MCAODC_01760 0.71 -0.0 343,005 + yjjW MCAODC_01760 0.87 +0.1 343,097 - +0.1 343,110 + +0.0 343,111 - +1.2 343,128 + +0.7 343,135 + +0.2 343,135 + +0.1 343,265 + -1.2 343,265 + -1.3 343,266 - -0.5 343,266 - +1.1 343,319 + +0.5 343,333 + +0.8 343,346 + -2.6 343,357 + +2.4 343,357 + +0.2 343,357 + -0.4 343,358 - +0.9 343,358 - +0.4 343,358 - +1.0 343,358 - +0.5 343,358 - -0.7 343,365 - -1.2 343,365 - +0.5 343,365 - -0.4 343,367 + +1.0 343,367 + +0.2 343,367 + -4.8 343,368 - -0.1 343,565 - yjjV MCAODC_01775 0.30 -1.3 343,571 + yjjV MCAODC_01775 0.31 +0.5 343,571 + yjjV MCAODC_01775 0.31 -0.3 343,571 + yjjV MCAODC_01775 0.31 -0.7 343,571 + yjjV MCAODC_01775 0.31 -3.2 343,571 + yjjV MCAODC_01775 0.31 +0.2 343,572 - yjjV MCAODC_01775 0.31 +0.3 343,572 - yjjV MCAODC_01775 0.31 +0.4 343,572 - yjjV MCAODC_01775 0.31 +0.1 343,572 - yjjV MCAODC_01775 0.31 -2.0 343,572 - yjjV MCAODC_01775 0.31 -2.0 343,572 - yjjV MCAODC_01775 0.31 -0.4 343,575 - yjjV MCAODC_01775 0.31 -3.0 343,605 + yjjV MCAODC_01775 0.35 -4.0 343,679 + yjjV MCAODC_01775 0.44 -1.0 343,679 + yjjV MCAODC_01775 0.44 +0.7 343,680 - yjjV MCAODC_01775 0.44 -1.5 343,738 + yjjV MCAODC_01775 0.52 +0.1 343,896 - yjjV MCAODC_01775 0.72 -0.1 343,910 + yjjV MCAODC_01775 0.74 +0.8 343,911 - yjjV MCAODC_01775 0.74 +1.0 343,911 - yjjV MCAODC_01775 0.74 +0.1 343,937 - yjjV MCAODC_01775 0.77 -1.7 344,016 + yjjV MCAODC_01775 0.87 +0.3 344,100 - +1.1
Or see this region's nucleotide sequence