Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt fimD and fimD are separated by 174 nucleotides fimD and MCAODC_01535 are separated by 12 nucleotides MCAODC_01535 and nhaR are separated by 37 nucleotides
MCAODC_01525: fimD - fimbrial assembly protein, at 295,442 to 297,343
fimD
MCAODC_01530: fimD - fimbrial assembly protein, at 297,518 to 297,892
fimD
MCAODC_01535: MCAODC_01535 - fimbrial family protein, at 297,905 to 298,864
_01535
MCAODC_01540: nhaR - transcriptional activator NhaR, at 298,902 to 299,801
nhaR
Position (kb) 297
298
299 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 297.013 kb on + strand, within fimD at 297.232 kb on - strand at 297.233 kb on + strand at 297.233 kb on + strand at 297.309 kb on + strand at 297.309 kb on + strand at 297.320 kb on + strand at 297.361 kb on + strand at 297.522 kb on + strand at 297.665 kb on + strand, within fimD at 297.666 kb on - strand, within fimD at 297.668 kb on - strand, within fimD at 297.669 kb on + strand, within fimD at 297.669 kb on + strand, within fimD at 297.880 kb on + strand at 298.001 kb on + strand, within MCAODC_01535 at 298.002 kb on - strand, within MCAODC_01535 at 298.003 kb on + strand, within MCAODC_01535 at 298.221 kb on + strand, within MCAODC_01535 at 298.632 kb on + strand, within MCAODC_01535 at 298.736 kb on + strand, within MCAODC_01535 at 298.766 kb on - strand, within MCAODC_01535 at 298.779 kb on + strand at 298.784 kb on - strand at 298.795 kb on + strand at 298.795 kb on + strand at 298.851 kb on + strand at 298.856 kb on + strand at 298.856 kb on + strand at 298.862 kb on + strand at 298.863 kb on - strand at 298.863 kb on - strand at 298.867 kb on + strand at 298.868 kb on - strand at 298.868 kb on - strand at 298.881 kb on + strand at 298.882 kb on - strand at 298.920 kb on - strand at 298.992 kb on - strand, within nhaR at 298.992 kb on - strand, within nhaR at 298.999 kb on + strand, within nhaR at 299.054 kb on - strand, within nhaR at 299.068 kb on + strand, within nhaR at 299.069 kb on - strand, within nhaR at 299.155 kb on - strand, within nhaR at 299.160 kb on + strand, within nhaR at 299.174 kb on + strand, within nhaR at 299.183 kb on + strand, within nhaR at 299.183 kb on + strand, within nhaR at 299.184 kb on - strand, within nhaR at 299.187 kb on + strand, within nhaR at 299.188 kb on - strand, within nhaR at 299.188 kb on - strand, within nhaR at 299.280 kb on - strand, within nhaR at 299.388 kb on + strand, within nhaR at 299.388 kb on + strand, within nhaR at 299.451 kb on + strand, within nhaR at 299.451 kb on + strand, within nhaR at 299.496 kb on + strand, within nhaR at 299.497 kb on - strand, within nhaR at 299.542 kb on + strand, within nhaR at 299.576 kb on + strand, within nhaR at 299.599 kb on + strand, within nhaR at 299.649 kb on - strand, within nhaR at 299.649 kb on - strand, within nhaR at 299.652 kb on + strand, within nhaR at 299.652 kb on + strand, within nhaR at 299.653 kb on - strand, within nhaR at 299.712 kb on + strand at 299.716 kb on + strand at 299.716 kb on + strand at 299.717 kb on - strand at 299.753 kb on + strand at 299.753 kb on + strand at 299.754 kb on - strand at 299.755 kb on + strand at 299.755 kb on + strand at 299.756 kb on - strand at 299.770 kb on + strand at 299.773 kb on + strand at 299.773 kb on + strand at 299.773 kb on + strand at 299.773 kb on + strand at 299.773 kb on + strand at 299.774 kb on - strand at 299.774 kb on - strand at 299.774 kb on - strand at 299.786 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 297,013 + fimD MCAODC_01525 0.83 +0.5 297,232 - -0.4 297,233 + +0.0 297,233 + -0.6 297,309 + +0.6 297,309 + -0.4 297,320 + +0.3 297,361 + -1.8 297,522 + -1.6 297,665 + fimD MCAODC_01530 0.39 -0.4 297,666 - fimD MCAODC_01530 0.39 +1.0 297,668 - fimD MCAODC_01530 0.40 -0.4 297,669 + fimD MCAODC_01530 0.40 +1.3 297,669 + fimD MCAODC_01530 0.40 +0.9 297,880 + -0.6 298,001 + MCAODC_01535 0.10 -0.7 298,002 - MCAODC_01535 0.10 +0.7 298,003 + MCAODC_01535 0.10 -0.4 298,221 + MCAODC_01535 0.33 -0.4 298,632 + MCAODC_01535 0.76 +0.5 298,736 + MCAODC_01535 0.87 -0.7 298,766 - MCAODC_01535 0.90 -0.5 298,779 + +4.0 298,784 - +1.3 298,795 + +0.2 298,795 + +0.4 298,851 + +0.8 298,856 + +1.2 298,856 + +1.8 298,862 + +1.7 298,863 - -0.3 298,863 - +0.6 298,867 + +0.0 298,868 - -0.7 298,868 - +0.2 298,881 + -0.7 298,882 - -0.3 298,920 - -0.0 298,992 - nhaR MCAODC_01540 0.10 -2.9 298,992 - nhaR MCAODC_01540 0.10 +0.4 298,999 + nhaR MCAODC_01540 0.11 -1.1 299,054 - nhaR MCAODC_01540 0.17 -0.1 299,068 + nhaR MCAODC_01540 0.18 -0.1 299,069 - nhaR MCAODC_01540 0.19 +0.7 299,155 - nhaR MCAODC_01540 0.28 -0.0 299,160 + nhaR MCAODC_01540 0.29 +0.5 299,174 + nhaR MCAODC_01540 0.30 +0.1 299,183 + nhaR MCAODC_01540 0.31 +0.2 299,183 + nhaR MCAODC_01540 0.31 +1.2 299,184 - nhaR MCAODC_01540 0.31 -3.6 299,187 + nhaR MCAODC_01540 0.32 -0.2 299,188 - nhaR MCAODC_01540 0.32 -2.6 299,188 - nhaR MCAODC_01540 0.32 -4.2 299,280 - nhaR MCAODC_01540 0.42 -1.2 299,388 + nhaR MCAODC_01540 0.54 +0.2 299,388 + nhaR MCAODC_01540 0.54 +0.9 299,451 + nhaR MCAODC_01540 0.61 +1.7 299,451 + nhaR MCAODC_01540 0.61 -0.9 299,496 + nhaR MCAODC_01540 0.66 -0.7 299,497 - nhaR MCAODC_01540 0.66 +0.2 299,542 + nhaR MCAODC_01540 0.71 +0.3 299,576 + nhaR MCAODC_01540 0.75 +0.7 299,599 + nhaR MCAODC_01540 0.77 +1.4 299,649 - nhaR MCAODC_01540 0.83 +0.4 299,649 - nhaR MCAODC_01540 0.83 +2.0 299,652 + nhaR MCAODC_01540 0.83 +0.2 299,652 + nhaR MCAODC_01540 0.83 -1.3 299,653 - nhaR MCAODC_01540 0.83 -1.2 299,712 + +2.1 299,716 + +1.0 299,716 + +1.2 299,717 - +0.9 299,753 + -0.3 299,753 + -0.7 299,754 - +0.1 299,755 + +0.1 299,755 + +1.3 299,756 - +1.5 299,770 + -1.9 299,773 + -3.0 299,773 + +0.8 299,773 + +1.2 299,773 + +1.4 299,773 + +0.2 299,774 - +0.3 299,774 - -0.3 299,774 - +1.1 299,786 - +0.3
Or see this region's nucleotide sequence