Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt hofC and guaC are separated by 34 nucleotides guaC and yacM are separated by 155 nucleotides yacM and coaE are separated by 24 nucleotides coaE and zapD overlap by 1 nucleotides
MCAODC_01060: hofC - protein transport protein HofC, at 196,997 to 198,199
hofC
MCAODC_01065: guaC - GMP reductase, at 198,234 to 199,277
guaC
MCAODC_01070: yacM - Protein YacM, at 199,433 to 199,477
yacM
MCAODC_01075: coaE - dephospho-CoA kinase, at 199,502 to 200,122
coaE
MCAODC_01080: zapD - cell division protein ZapD, at 200,122 to 200,865
zapD
Position (kb) 198
199
200 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 197.266 kb on + strand, within hofC at 197.337 kb on + strand, within hofC at 197.337 kb on + strand, within hofC at 197.337 kb on + strand, within hofC at 197.340 kb on + strand, within hofC at 197.341 kb on - strand, within hofC at 197.369 kb on + strand, within hofC at 197.473 kb on - strand, within hofC at 197.484 kb on + strand, within hofC at 197.484 kb on + strand, within hofC at 197.484 kb on + strand, within hofC at 197.485 kb on - strand, within hofC at 197.489 kb on + strand, within hofC at 197.506 kb on - strand, within hofC at 197.570 kb on + strand, within hofC at 197.570 kb on + strand, within hofC at 197.570 kb on + strand, within hofC at 197.570 kb on + strand, within hofC at 197.570 kb on + strand, within hofC at 197.570 kb on + strand, within hofC at 197.570 kb on + strand, within hofC at 197.570 kb on + strand, within hofC at 197.571 kb on - strand, within hofC at 197.571 kb on - strand, within hofC at 197.571 kb on - strand, within hofC at 197.571 kb on - strand, within hofC at 197.571 kb on - strand, within hofC at 197.571 kb on - strand, within hofC at 197.571 kb on - strand, within hofC at 197.571 kb on - strand, within hofC at 197.572 kb on + strand, within hofC at 197.573 kb on - strand, within hofC at 197.602 kb on - strand, within hofC at 197.689 kb on + strand, within hofC at 197.689 kb on + strand, within hofC at 197.689 kb on + strand, within hofC at 197.690 kb on - strand, within hofC at 197.690 kb on - strand, within hofC at 197.690 kb on - strand, within hofC at 197.756 kb on - strand, within hofC at 197.797 kb on + strand, within hofC at 197.797 kb on + strand, within hofC at 197.839 kb on - strand, within hofC at 197.915 kb on - strand, within hofC at 197.985 kb on + strand, within hofC at 197.986 kb on - strand, within hofC at 198.027 kb on + strand, within hofC at 198.027 kb on + strand, within hofC at 198.081 kb on + strand at 198.081 kb on + strand at 198.081 kb on + strand at 198.081 kb on + strand at 198.081 kb on + strand at 198.082 kb on - strand at 198.082 kb on - strand at 198.082 kb on - strand at 198.082 kb on - strand at 198.082 kb on - strand at 198.082 kb on - strand at 198.152 kb on + strand at 198.153 kb on - strand at 198.153 kb on - strand at 198.153 kb on - strand at 198.171 kb on + strand at 198.171 kb on + strand at 198.171 kb on + strand at 198.278 kb on + strand at 198.325 kb on + strand at 198.325 kb on + strand at 198.325 kb on + strand at 198.325 kb on + strand at 198.325 kb on + strand at 198.325 kb on + strand at 198.325 kb on + strand at 198.326 kb on - strand at 198.326 kb on - strand at 198.326 kb on - strand at 198.326 kb on - strand at 198.330 kb on - strand at 198.368 kb on + strand, within guaC at 198.368 kb on + strand, within guaC at 198.407 kb on + strand, within guaC at 198.407 kb on + strand, within guaC at 198.408 kb on - strand, within guaC at 198.408 kb on - strand, within guaC at 198.408 kb on - strand, within guaC at 198.478 kb on + strand, within guaC at 198.479 kb on - strand, within guaC at 198.720 kb on - strand, within guaC at 198.749 kb on + strand, within guaC at 198.801 kb on + strand, within guaC at 198.802 kb on - strand, within guaC at 198.802 kb on - strand, within guaC at 198.802 kb on - strand, within guaC at 198.807 kb on - strand, within guaC at 198.896 kb on + strand, within guaC at 198.896 kb on + strand, within guaC at 198.897 kb on - strand, within guaC at 198.910 kb on - strand, within guaC at 199.042 kb on + strand, within guaC at 199.043 kb on - strand, within guaC at 199.043 kb on - strand, within guaC at 199.049 kb on + strand, within guaC at 199.050 kb on - strand, within guaC at 199.107 kb on + strand, within guaC at 199.107 kb on + strand, within guaC at 199.107 kb on + strand, within guaC at 199.107 kb on + strand, within guaC at 199.108 kb on - strand, within guaC at 199.118 kb on + strand, within guaC at 199.119 kb on - strand, within guaC at 199.119 kb on - strand, within guaC at 199.119 kb on - strand, within guaC at 199.119 kb on - strand, within guaC at 199.245 kb on - strand at 199.271 kb on + strand at 199.302 kb on + strand at 199.303 kb on - strand at 199.303 kb on - strand at 199.303 kb on - strand at 199.304 kb on + strand at 199.305 kb on - strand at 199.310 kb on + strand at 199.311 kb on - strand at 199.333 kb on + strand at 199.334 kb on - strand at 199.338 kb on + strand at 199.338 kb on + strand at 199.339 kb on - strand at 199.339 kb on - strand at 199.388 kb on + strand at 199.411 kb on + strand at 199.411 kb on + strand at 199.415 kb on + strand at 199.416 kb on - strand at 199.416 kb on - strand at 199.501 kb on + strand at 199.512 kb on + strand at 199.512 kb on + strand at 199.512 kb on + strand at 199.512 kb on + strand at 199.512 kb on + strand at 199.512 kb on + strand at 199.512 kb on + strand at 199.512 kb on + strand at 199.512 kb on + strand at 199.512 kb on + strand at 199.513 kb on - strand at 199.513 kb on - strand at 200.120 kb on + strand at 200.170 kb on - strand at 200.170 kb on - strand at 200.170 kb on - strand at 200.212 kb on - strand, within zapD at 200.216 kb on + strand, within zapD at 200.217 kb on - strand, within zapD at 200.263 kb on - strand, within zapD
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 197,266 + hofC MCAODC_01060 0.22 +1.3 197,337 + hofC MCAODC_01060 0.28 +0.6 197,337 + hofC MCAODC_01060 0.28 +0.2 197,337 + hofC MCAODC_01060 0.28 +0.1 197,340 + hofC MCAODC_01060 0.29 -0.2 197,341 - hofC MCAODC_01060 0.29 +0.4 197,369 + hofC MCAODC_01060 0.31 +0.6 197,473 - hofC MCAODC_01060 0.40 +0.0 197,484 + hofC MCAODC_01060 0.40 +0.1 197,484 + hofC MCAODC_01060 0.40 +0.3 197,484 + hofC MCAODC_01060 0.40 +0.2 197,485 - hofC MCAODC_01060 0.41 +0.2 197,489 + hofC MCAODC_01060 0.41 +0.4 197,506 - hofC MCAODC_01060 0.42 +0.6 197,570 + hofC MCAODC_01060 0.48 -0.0 197,570 + hofC MCAODC_01060 0.48 +1.3 197,570 + hofC MCAODC_01060 0.48 -3.0 197,570 + hofC MCAODC_01060 0.48 -1.3 197,570 + hofC MCAODC_01060 0.48 +1.5 197,570 + hofC MCAODC_01060 0.48 +0.2 197,570 + hofC MCAODC_01060 0.48 +0.8 197,570 + hofC MCAODC_01060 0.48 +1.0 197,571 - hofC MCAODC_01060 0.48 -1.3 197,571 - hofC MCAODC_01060 0.48 +1.0 197,571 - hofC MCAODC_01060 0.48 -2.9 197,571 - hofC MCAODC_01060 0.48 -0.5 197,571 - hofC MCAODC_01060 0.48 -0.3 197,571 - hofC MCAODC_01060 0.48 +0.1 197,571 - hofC MCAODC_01060 0.48 +0.5 197,571 - hofC MCAODC_01060 0.48 +1.8 197,572 + hofC MCAODC_01060 0.48 -0.4 197,573 - hofC MCAODC_01060 0.48 +0.3 197,602 - hofC MCAODC_01060 0.50 +0.2 197,689 + hofC MCAODC_01060 0.58 +0.7 197,689 + hofC MCAODC_01060 0.58 +1.2 197,689 + hofC MCAODC_01060 0.58 -2.7 197,690 - hofC MCAODC_01060 0.58 -0.1 197,690 - hofC MCAODC_01060 0.58 +0.9 197,690 - hofC MCAODC_01060 0.58 -0.1 197,756 - hofC MCAODC_01060 0.63 -0.5 197,797 + hofC MCAODC_01060 0.67 +2.4 197,797 + hofC MCAODC_01060 0.67 -1.1 197,839 - hofC MCAODC_01060 0.70 -0.0 197,915 - hofC MCAODC_01060 0.76 -3.4 197,985 + hofC MCAODC_01060 0.82 +0.0 197,986 - hofC MCAODC_01060 0.82 +1.2 198,027 + hofC MCAODC_01060 0.86 +0.1 198,027 + hofC MCAODC_01060 0.86 +1.6 198,081 + -0.7 198,081 + -2.1 198,081 + -0.7 198,081 + +0.7 198,081 + +1.2 198,082 - -1.8 198,082 - +0.1 198,082 - +1.2 198,082 - +0.8 198,082 - -1.9 198,082 - +1.1 198,152 + +0.2 198,153 - +1.6 198,153 - +1.2 198,153 - +0.6 198,171 + -0.3 198,171 + -0.3 198,171 + +0.0 198,278 + -0.6 198,325 + +0.7 198,325 + -0.4 198,325 + -1.0 198,325 + +0.3 198,325 + -0.8 198,325 + -1.5 198,325 + +1.7 198,326 - -0.6 198,326 - +0.2 198,326 - -0.8 198,326 - -0.5 198,330 - -0.1 198,368 + guaC MCAODC_01065 0.13 -0.0 198,368 + guaC MCAODC_01065 0.13 -0.2 198,407 + guaC MCAODC_01065 0.17 +0.8 198,407 + guaC MCAODC_01065 0.17 -2.2 198,408 - guaC MCAODC_01065 0.17 -1.7 198,408 - guaC MCAODC_01065 0.17 -0.5 198,408 - guaC MCAODC_01065 0.17 -1.9 198,478 + guaC MCAODC_01065 0.23 +1.8 198,479 - guaC MCAODC_01065 0.23 +1.1 198,720 - guaC MCAODC_01065 0.47 -2.6 198,749 + guaC MCAODC_01065 0.49 -0.2 198,801 + guaC MCAODC_01065 0.54 -1.2 198,802 - guaC MCAODC_01065 0.54 +0.2 198,802 - guaC MCAODC_01065 0.54 +1.2 198,802 - guaC MCAODC_01065 0.54 +0.2 198,807 - guaC MCAODC_01065 0.55 -0.9 198,896 + guaC MCAODC_01065 0.63 -3.3 198,896 + guaC MCAODC_01065 0.63 -0.1 198,897 - guaC MCAODC_01065 0.64 +0.7 198,910 - guaC MCAODC_01065 0.65 -1.0 199,042 + guaC MCAODC_01065 0.77 +0.7 199,043 - guaC MCAODC_01065 0.77 +1.1 199,043 - guaC MCAODC_01065 0.77 +0.1 199,049 + guaC MCAODC_01065 0.78 -3.8 199,050 - guaC MCAODC_01065 0.78 -1.3 199,107 + guaC MCAODC_01065 0.84 -0.4 199,107 + guaC MCAODC_01065 0.84 -0.2 199,107 + guaC MCAODC_01065 0.84 +0.3 199,107 + guaC MCAODC_01065 0.84 -0.4 199,108 - guaC MCAODC_01065 0.84 -0.7 199,118 + guaC MCAODC_01065 0.85 -0.1 199,119 - guaC MCAODC_01065 0.85 +0.6 199,119 - guaC MCAODC_01065 0.85 -2.4 199,119 - guaC MCAODC_01065 0.85 +2.1 199,119 - guaC MCAODC_01065 0.85 +0.1 199,245 - -2.5 199,271 + +0.5 199,302 + +1.4 199,303 - -2.9 199,303 - +1.5 199,303 - +0.8 199,304 + -0.8 199,305 - +0.2 199,310 + +1.4 199,311 - -3.3 199,333 + +0.3 199,334 - +0.8 199,338 + -0.0 199,338 + +0.1 199,339 - -0.9 199,339 - -0.1 199,388 + +0.5 199,411 + +1.3 199,411 + +0.2 199,415 + +0.8 199,416 - -2.3 199,416 - +3.9 199,501 + +0.9 199,512 + -1.1 199,512 + +0.2 199,512 + +1.1 199,512 + +0.6 199,512 + -0.3 199,512 + -3.6 199,512 + +1.1 199,512 + +0.3 199,512 + +0.3 199,512 + -1.0 199,513 - -2.4 199,513 - +1.3 200,120 + -0.7 200,170 - +0.9 200,170 - +1.9 200,170 - +1.7 200,212 - zapD MCAODC_01080 0.12 +1.1 200,216 + zapD MCAODC_01080 0.13 +0.2 200,217 - zapD MCAODC_01080 0.13 -2.1 200,263 - zapD MCAODC_01080 0.19 -1.0
Or see this region's nucleotide sequence