Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt gluQRS and pcnB are separated by 92 nucleotides pcnB and folK overlap by 4 nucleotides folK and MCAODC_00880 are separated by 280 nucleotides
MCAODC_00865: gluQRS - tRNA glutamyl-Q(34) synthetase GluQRS, at 152,776 to 153,702
gluQRS
MCAODC_00870: pcnB - polynucleotide adenylyltransferase PcnB, at 153,795 to 155,159
pcnB
MCAODC_00875: folK - 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase, at 155,156 to 155,638
folK
MCAODC_00880: MCAODC_00880 - fimbrial protein, at 155,919 to 156,515
_00880
Position (kb) 153
154
155
156 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 152.821 kb on + strand at 152.821 kb on + strand at 152.821 kb on + strand at 152.821 kb on + strand at 152.821 kb on + strand at 152.821 kb on + strand at 152.821 kb on + strand at 152.821 kb on + strand at 152.821 kb on + strand at 152.822 kb on - strand at 152.822 kb on - strand at 152.822 kb on - strand at 152.822 kb on - strand at 152.822 kb on - strand at 152.822 kb on - strand at 152.822 kb on - strand at 152.822 kb on - strand at 152.822 kb on - strand at 152.823 kb on + strand at 152.823 kb on + strand at 152.893 kb on + strand, within gluQRS at 152.894 kb on - strand, within gluQRS at 152.894 kb on - strand, within gluQRS at 152.944 kb on - strand, within gluQRS at 152.982 kb on + strand, within gluQRS at 152.983 kb on - strand, within gluQRS at 152.983 kb on - strand, within gluQRS at 153.004 kb on + strand, within gluQRS at 153.080 kb on + strand, within gluQRS at 153.080 kb on + strand, within gluQRS at 153.095 kb on + strand, within gluQRS at 153.095 kb on + strand, within gluQRS at 153.095 kb on + strand, within gluQRS at 153.101 kb on - strand, within gluQRS at 153.101 kb on - strand, within gluQRS at 153.101 kb on - strand, within gluQRS at 153.103 kb on + strand, within gluQRS at 153.126 kb on + strand, within gluQRS at 153.148 kb on + strand, within gluQRS at 153.149 kb on - strand, within gluQRS at 153.231 kb on + strand, within gluQRS at 153.252 kb on + strand, within gluQRS at 153.288 kb on + strand, within gluQRS at 153.289 kb on - strand, within gluQRS at 153.319 kb on + strand, within gluQRS at 153.319 kb on + strand, within gluQRS at 153.320 kb on - strand, within gluQRS at 153.419 kb on - strand, within gluQRS at 153.448 kb on + strand, within gluQRS at 153.449 kb on - strand, within gluQRS at 153.449 kb on - strand, within gluQRS at 153.545 kb on + strand, within gluQRS at 153.546 kb on - strand, within gluQRS at 153.546 kb on - strand, within gluQRS at 153.706 kb on - strand at 153.706 kb on - strand at 153.712 kb on - strand at 153.758 kb on + strand at 153.875 kb on + strand at 153.918 kb on + strand at 153.918 kb on + strand at 153.929 kb on + strand at 154.266 kb on + strand, within pcnB at 154.269 kb on + strand, within pcnB at 154.269 kb on + strand, within pcnB at 154.269 kb on + strand, within pcnB at 154.299 kb on + strand, within pcnB at 154.385 kb on + strand, within pcnB at 154.385 kb on + strand, within pcnB at 154.385 kb on + strand, within pcnB at 154.385 kb on + strand, within pcnB at 154.385 kb on + strand, within pcnB at 154.399 kb on + strand, within pcnB at 154.514 kb on + strand, within pcnB at 154.548 kb on + strand, within pcnB at 154.548 kb on + strand, within pcnB at 154.548 kb on + strand, within pcnB at 154.551 kb on - strand, within pcnB at 154.551 kb on - strand, within pcnB at 154.606 kb on - strand, within pcnB at 154.664 kb on + strand, within pcnB at 154.664 kb on + strand, within pcnB at 154.688 kb on + strand, within pcnB at 154.782 kb on + strand, within pcnB at 154.782 kb on + strand, within pcnB at 154.898 kb on + strand, within pcnB at 154.946 kb on + strand, within pcnB at 154.946 kb on + strand, within pcnB at 154.962 kb on + strand, within pcnB at 154.997 kb on + strand, within pcnB at 155.168 kb on + strand at 155.168 kb on + strand at 155.168 kb on + strand at 155.586 kb on + strand, within folK at 155.613 kb on + strand at 155.614 kb on - strand at 155.616 kb on + strand at 155.617 kb on - strand at 155.659 kb on - strand at 155.664 kb on - strand at 155.683 kb on - strand at 155.868 kb on - strand at 155.896 kb on + strand at 155.977 kb on + strand at 155.977 kb on + strand at 155.978 kb on - strand at 155.978 kb on - strand at 156.010 kb on + strand, within MCAODC_00880 at 156.010 kb on + strand, within MCAODC_00880 at 156.026 kb on + strand, within MCAODC_00880 at 156.040 kb on + strand, within MCAODC_00880 at 156.040 kb on + strand, within MCAODC_00880 at 156.041 kb on - strand, within MCAODC_00880 at 156.041 kb on - strand, within MCAODC_00880 at 156.044 kb on + strand, within MCAODC_00880 at 156.044 kb on + strand, within MCAODC_00880 at 156.050 kb on + strand, within MCAODC_00880 at 156.051 kb on - strand, within MCAODC_00880 at 156.056 kb on + strand, within MCAODC_00880 at 156.057 kb on - strand, within MCAODC_00880 at 156.062 kb on + strand, within MCAODC_00880 at 156.089 kb on + strand, within MCAODC_00880 at 156.107 kb on + strand, within MCAODC_00880 at 156.122 kb on + strand, within MCAODC_00880
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 152,821 + +2.7 152,821 + +0.8 152,821 + +0.9 152,821 + -0.3 152,821 + +1.3 152,821 + -0.9 152,821 + +2.1 152,821 + +0.3 152,821 + -0.6 152,822 - -0.7 152,822 - -1.3 152,822 - +0.4 152,822 - +1.4 152,822 - -0.5 152,822 - +0.3 152,822 - -0.7 152,822 - -2.3 152,822 - -0.3 152,823 + -0.9 152,823 + -0.7 152,893 + gluQRS MCAODC_00865 0.13 -1.2 152,894 - gluQRS MCAODC_00865 0.13 -1.9 152,894 - gluQRS MCAODC_00865 0.13 -0.3 152,944 - gluQRS MCAODC_00865 0.18 +1.9 152,982 + gluQRS MCAODC_00865 0.22 +0.5 152,983 - gluQRS MCAODC_00865 0.22 -0.2 152,983 - gluQRS MCAODC_00865 0.22 +1.3 153,004 + gluQRS MCAODC_00865 0.25 +2.7 153,080 + gluQRS MCAODC_00865 0.33 -0.5 153,080 + gluQRS MCAODC_00865 0.33 -0.7 153,095 + gluQRS MCAODC_00865 0.34 +0.4 153,095 + gluQRS MCAODC_00865 0.34 +0.4 153,095 + gluQRS MCAODC_00865 0.34 +0.8 153,101 - gluQRS MCAODC_00865 0.35 -0.1 153,101 - gluQRS MCAODC_00865 0.35 -3.7 153,101 - gluQRS MCAODC_00865 0.35 -0.0 153,103 + gluQRS MCAODC_00865 0.35 +0.1 153,126 + gluQRS MCAODC_00865 0.38 +1.2 153,148 + gluQRS MCAODC_00865 0.40 +1.9 153,149 - gluQRS MCAODC_00865 0.40 +0.0 153,231 + gluQRS MCAODC_00865 0.49 +1.7 153,252 + gluQRS MCAODC_00865 0.51 -1.7 153,288 + gluQRS MCAODC_00865 0.55 +0.5 153,289 - gluQRS MCAODC_00865 0.55 -1.1 153,319 + gluQRS MCAODC_00865 0.59 -0.8 153,319 + gluQRS MCAODC_00865 0.59 -1.4 153,320 - gluQRS MCAODC_00865 0.59 -0.1 153,419 - gluQRS MCAODC_00865 0.69 -0.3 153,448 + gluQRS MCAODC_00865 0.72 +0.6 153,449 - gluQRS MCAODC_00865 0.73 -0.2 153,449 - gluQRS MCAODC_00865 0.73 +0.1 153,545 + gluQRS MCAODC_00865 0.83 -1.0 153,546 - gluQRS MCAODC_00865 0.83 -0.6 153,546 - gluQRS MCAODC_00865 0.83 +0.5 153,706 - +0.5 153,706 - -0.2 153,712 - -0.5 153,758 + -0.6 153,875 + +0.5 153,918 + -1.5 153,918 + -4.3 153,929 + -3.1 154,266 + pcnB MCAODC_00870 0.35 +1.3 154,269 + pcnB MCAODC_00870 0.35 -1.7 154,269 + pcnB MCAODC_00870 0.35 +1.4 154,269 + pcnB MCAODC_00870 0.35 -2.9 154,299 + pcnB MCAODC_00870 0.37 +2.0 154,385 + pcnB MCAODC_00870 0.43 -0.5 154,385 + pcnB MCAODC_00870 0.43 -2.3 154,385 + pcnB MCAODC_00870 0.43 +0.5 154,385 + pcnB MCAODC_00870 0.43 -2.8 154,385 + pcnB MCAODC_00870 0.43 -0.9 154,399 + pcnB MCAODC_00870 0.44 -2.1 154,514 + pcnB MCAODC_00870 0.53 +1.8 154,548 + pcnB MCAODC_00870 0.55 -3.2 154,548 + pcnB MCAODC_00870 0.55 +0.6 154,548 + pcnB MCAODC_00870 0.55 +0.4 154,551 - pcnB MCAODC_00870 0.55 -1.2 154,551 - pcnB MCAODC_00870 0.55 -1.1 154,606 - pcnB MCAODC_00870 0.59 -0.9 154,664 + pcnB MCAODC_00870 0.64 -0.3 154,664 + pcnB MCAODC_00870 0.64 -0.8 154,688 + pcnB MCAODC_00870 0.65 +0.4 154,782 + pcnB MCAODC_00870 0.72 +0.7 154,782 + pcnB MCAODC_00870 0.72 -0.5 154,898 + pcnB MCAODC_00870 0.81 -1.0 154,946 + pcnB MCAODC_00870 0.84 -0.4 154,946 + pcnB MCAODC_00870 0.84 -0.7 154,962 + pcnB MCAODC_00870 0.85 +1.5 154,997 + pcnB MCAODC_00870 0.88 -1.3 155,168 + -4.0 155,168 + -0.3 155,168 + -0.6 155,586 + folK MCAODC_00875 0.89 +0.7 155,613 + +0.4 155,614 - +1.0 155,616 + +1.8 155,617 - +0.8 155,659 - -0.8 155,664 - -0.5 155,683 - -0.3 155,868 - -0.7 155,896 + -2.0 155,977 + -0.9 155,977 + +0.2 155,978 - -0.2 155,978 - +0.0 156,010 + MCAODC_00880 0.15 -0.1 156,010 + MCAODC_00880 0.15 +0.5 156,026 + MCAODC_00880 0.18 -0.1 156,040 + MCAODC_00880 0.20 -1.8 156,040 + MCAODC_00880 0.20 +1.3 156,041 - MCAODC_00880 0.20 +0.0 156,041 - MCAODC_00880 0.20 -0.1 156,044 + MCAODC_00880 0.21 -1.8 156,044 + MCAODC_00880 0.21 +0.6 156,050 + MCAODC_00880 0.22 +0.7 156,051 - MCAODC_00880 0.22 -2.3 156,056 + MCAODC_00880 0.23 +1.1 156,057 - MCAODC_00880 0.23 -0.1 156,062 + MCAODC_00880 0.24 -3.3 156,089 + MCAODC_00880 0.28 -0.4 156,107 + MCAODC_00880 0.31 +0.3 156,122 + MCAODC_00880 0.34 +0.5
Or see this region's nucleotide sequence