Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt degP and dgt are separated by 129 nucleotides dgt and mtnN are separated by 83 nucleotides mtnN and btuF overlap by 8 nucleotides
MCAODC_00770: degP - serine endoprotease DegP, at 130,703 to 132,127
degP
MCAODC_00775: dgt - dGTPase, at 132,257 to 133,774
dgt
MCAODC_00780: mtnN - 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase, at 133,858 to 134,556
mtnN
MCAODC_00785: btuF - vitamin B12 ABC transporter substrate-binding protein BtuF, at 134,549 to 135,349
btuF
Position (kb) 132
133
134 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 131.380 kb on + strand, within degP at 131.425 kb on + strand, within degP at 131.520 kb on - strand, within degP at 131.546 kb on - strand, within degP at 131.563 kb on - strand, within degP at 131.563 kb on - strand, within degP at 131.563 kb on - strand, within degP at 131.599 kb on + strand, within degP at 131.599 kb on + strand, within degP at 131.686 kb on + strand, within degP at 131.754 kb on + strand, within degP at 131.755 kb on - strand, within degP at 131.755 kb on - strand, within degP at 131.926 kb on + strand, within degP at 131.927 kb on - strand, within degP at 131.936 kb on - strand, within degP at 131.957 kb on + strand, within degP at 131.958 kb on - strand, within degP at 131.958 kb on - strand, within degP at 131.958 kb on - strand, within degP at 131.963 kb on - strand, within degP at 132.084 kb on - strand at 132.129 kb on + strand at 132.145 kb on - strand at 132.152 kb on - strand at 132.185 kb on + strand at 132.223 kb on + strand at 132.300 kb on + strand at 132.300 kb on + strand at 132.301 kb on - strand at 132.301 kb on - strand at 132.323 kb on - strand at 132.349 kb on - strand at 132.352 kb on - strand at 132.354 kb on + strand at 132.354 kb on + strand at 132.411 kb on + strand, within dgt at 132.411 kb on + strand, within dgt at 132.411 kb on + strand, within dgt at 132.412 kb on - strand, within dgt at 132.446 kb on + strand, within dgt at 132.525 kb on - strand, within dgt at 132.535 kb on - strand, within dgt at 132.628 kb on + strand, within dgt at 132.629 kb on - strand, within dgt at 132.633 kb on - strand, within dgt at 132.712 kb on + strand, within dgt at 132.719 kb on - strand, within dgt at 132.748 kb on + strand, within dgt at 132.767 kb on + strand, within dgt at 132.768 kb on - strand, within dgt at 132.809 kb on - strand, within dgt at 132.917 kb on - strand, within dgt at 132.917 kb on - strand, within dgt at 132.960 kb on + strand, within dgt at 132.960 kb on + strand, within dgt at 132.961 kb on - strand, within dgt at 133.050 kb on + strand, within dgt at 133.051 kb on - strand, within dgt at 133.051 kb on - strand, within dgt at 133.051 kb on - strand, within dgt at 133.051 kb on - strand, within dgt at 133.068 kb on + strand, within dgt at 133.068 kb on + strand, within dgt at 133.072 kb on - strand, within dgt at 133.088 kb on + strand, within dgt at 133.088 kb on + strand, within dgt at 133.092 kb on + strand, within dgt at 133.139 kb on - strand, within dgt at 133.192 kb on + strand, within dgt at 133.192 kb on + strand, within dgt at 133.192 kb on + strand, within dgt at 133.192 kb on + strand, within dgt at 133.192 kb on + strand, within dgt at 133.192 kb on + strand, within dgt at 133.192 kb on + strand, within dgt at 133.193 kb on - strand, within dgt at 133.193 kb on - strand, within dgt at 133.193 kb on - strand, within dgt at 133.193 kb on - strand, within dgt at 133.193 kb on - strand, within dgt at 133.193 kb on - strand, within dgt at 133.235 kb on + strand, within dgt at 133.235 kb on + strand, within dgt at 133.235 kb on + strand, within dgt at 133.235 kb on + strand, within dgt at 133.235 kb on + strand, within dgt at 133.236 kb on - strand, within dgt at 133.236 kb on - strand, within dgt at 133.236 kb on - strand, within dgt at 133.236 kb on - strand, within dgt at 133.236 kb on - strand, within dgt at 133.236 kb on - strand, within dgt at 133.236 kb on - strand, within dgt at 133.295 kb on + strand, within dgt at 133.295 kb on + strand, within dgt at 133.296 kb on - strand, within dgt at 133.299 kb on - strand, within dgt at 133.485 kb on + strand, within dgt at 133.486 kb on - strand, within dgt at 133.501 kb on + strand, within dgt at 133.502 kb on - strand, within dgt at 133.502 kb on - strand, within dgt at 133.502 kb on - strand, within dgt at 133.539 kb on + strand, within dgt at 133.539 kb on + strand, within dgt at 133.540 kb on - strand, within dgt at 133.540 kb on - strand, within dgt at 133.540 kb on - strand, within dgt at 133.573 kb on + strand, within dgt at 133.660 kb on + strand at 133.660 kb on + strand at 133.796 kb on - strand at 133.796 kb on - strand at 133.796 kb on - strand at 133.819 kb on - strand at 133.933 kb on - strand, within mtnN at 134.531 kb on + strand at 134.531 kb on + strand at 134.554 kb on + strand at 134.554 kb on + strand at 134.554 kb on + strand at 134.555 kb on - strand at 134.555 kb on - strand at 134.555 kb on - strand at 134.555 kb on - strand at 134.696 kb on + strand, within btuF at 134.696 kb on + strand, within btuF at 134.696 kb on + strand, within btuF at 134.706 kb on - strand, within btuF
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 131,380 + degP MCAODC_00770 0.48 -2.9 131,425 + degP MCAODC_00770 0.51 -1.1 131,520 - degP MCAODC_00770 0.57 +0.4 131,546 - degP MCAODC_00770 0.59 +1.1 131,563 - degP MCAODC_00770 0.60 +0.4 131,563 - degP MCAODC_00770 0.60 -3.5 131,563 - degP MCAODC_00770 0.60 -0.1 131,599 + degP MCAODC_00770 0.63 -0.4 131,599 + degP MCAODC_00770 0.63 +0.0 131,686 + degP MCAODC_00770 0.69 -1.9 131,754 + degP MCAODC_00770 0.74 -1.9 131,755 - degP MCAODC_00770 0.74 -0.6 131,755 - degP MCAODC_00770 0.74 -3.8 131,926 + degP MCAODC_00770 0.86 -1.4 131,927 - degP MCAODC_00770 0.86 +0.3 131,936 - degP MCAODC_00770 0.87 -0.2 131,957 + degP MCAODC_00770 0.88 -2.3 131,958 - degP MCAODC_00770 0.88 -3.1 131,958 - degP MCAODC_00770 0.88 -3.0 131,958 - degP MCAODC_00770 0.88 -0.3 131,963 - degP MCAODC_00770 0.88 -1.4 132,084 - -2.3 132,129 + -1.1 132,145 - -0.0 132,152 - +1.0 132,185 + -3.7 132,223 + -0.3 132,300 + +0.4 132,300 + -1.1 132,301 - -0.1 132,301 - +1.5 132,323 - -0.6 132,349 - +0.8 132,352 - -1.7 132,354 + -1.3 132,354 + -1.0 132,411 + dgt MCAODC_00775 0.10 +0.6 132,411 + dgt MCAODC_00775 0.10 +1.2 132,411 + dgt MCAODC_00775 0.10 +0.8 132,412 - dgt MCAODC_00775 0.10 +0.2 132,446 + dgt MCAODC_00775 0.12 +0.5 132,525 - dgt MCAODC_00775 0.18 +2.0 132,535 - dgt MCAODC_00775 0.18 -0.9 132,628 + dgt MCAODC_00775 0.24 -1.5 132,629 - dgt MCAODC_00775 0.25 +0.2 132,633 - dgt MCAODC_00775 0.25 +0.4 132,712 + dgt MCAODC_00775 0.30 -1.0 132,719 - dgt MCAODC_00775 0.30 -0.7 132,748 + dgt MCAODC_00775 0.32 +0.7 132,767 + dgt MCAODC_00775 0.34 +1.3 132,768 - dgt MCAODC_00775 0.34 -1.2 132,809 - dgt MCAODC_00775 0.36 -0.4 132,917 - dgt MCAODC_00775 0.43 +0.6 132,917 - dgt MCAODC_00775 0.43 +0.3 132,960 + dgt MCAODC_00775 0.46 +0.5 132,960 + dgt MCAODC_00775 0.46 -0.4 132,961 - dgt MCAODC_00775 0.46 -1.1 133,050 + dgt MCAODC_00775 0.52 +0.3 133,051 - dgt MCAODC_00775 0.52 +0.7 133,051 - dgt MCAODC_00775 0.52 +0.1 133,051 - dgt MCAODC_00775 0.52 -0.9 133,051 - dgt MCAODC_00775 0.52 +0.0 133,068 + dgt MCAODC_00775 0.53 +0.6 133,068 + dgt MCAODC_00775 0.53 -1.0 133,072 - dgt MCAODC_00775 0.54 +1.1 133,088 + dgt MCAODC_00775 0.55 -0.7 133,088 + dgt MCAODC_00775 0.55 +0.3 133,092 + dgt MCAODC_00775 0.55 -0.2 133,139 - dgt MCAODC_00775 0.58 +1.1 133,192 + dgt MCAODC_00775 0.62 +0.9 133,192 + dgt MCAODC_00775 0.62 +1.1 133,192 + dgt MCAODC_00775 0.62 -0.2 133,192 + dgt MCAODC_00775 0.62 +0.6 133,192 + dgt MCAODC_00775 0.62 -3.1 133,192 + dgt MCAODC_00775 0.62 -0.2 133,192 + dgt MCAODC_00775 0.62 +0.8 133,193 - dgt MCAODC_00775 0.62 -0.4 133,193 - dgt MCAODC_00775 0.62 -1.8 133,193 - dgt MCAODC_00775 0.62 +0.3 133,193 - dgt MCAODC_00775 0.62 +0.2 133,193 - dgt MCAODC_00775 0.62 +0.3 133,193 - dgt MCAODC_00775 0.62 +1.4 133,235 + dgt MCAODC_00775 0.64 +1.2 133,235 + dgt MCAODC_00775 0.64 +2.9 133,235 + dgt MCAODC_00775 0.64 +1.0 133,235 + dgt MCAODC_00775 0.64 -0.1 133,235 + dgt MCAODC_00775 0.64 +2.1 133,236 - dgt MCAODC_00775 0.64 -0.5 133,236 - dgt MCAODC_00775 0.64 +0.2 133,236 - dgt MCAODC_00775 0.64 +0.7 133,236 - dgt MCAODC_00775 0.64 -0.7 133,236 - dgt MCAODC_00775 0.64 +0.2 133,236 - dgt MCAODC_00775 0.64 +0.4 133,236 - dgt MCAODC_00775 0.64 -0.1 133,295 + dgt MCAODC_00775 0.68 +0.8 133,295 + dgt MCAODC_00775 0.68 -0.1 133,296 - dgt MCAODC_00775 0.68 +1.3 133,299 - dgt MCAODC_00775 0.69 -0.0 133,485 + dgt MCAODC_00775 0.81 +0.1 133,486 - dgt MCAODC_00775 0.81 -0.1 133,501 + dgt MCAODC_00775 0.82 -0.5 133,502 - dgt MCAODC_00775 0.82 -1.2 133,502 - dgt MCAODC_00775 0.82 +0.8 133,502 - dgt MCAODC_00775 0.82 -0.4 133,539 + dgt MCAODC_00775 0.84 +0.3 133,539 + dgt MCAODC_00775 0.84 -0.6 133,540 - dgt MCAODC_00775 0.85 +1.3 133,540 - dgt MCAODC_00775 0.85 -0.5 133,540 - dgt MCAODC_00775 0.85 +0.6 133,573 + dgt MCAODC_00775 0.87 -0.6 133,660 + +0.4 133,660 + +0.1 133,796 - +0.8 133,796 - +0.9 133,796 - -0.9 133,819 - +1.2 133,933 - mtnN MCAODC_00780 0.11 -0.3 134,531 + +2.0 134,531 + +0.3 134,554 + -1.0 134,554 + -2.1 134,554 + +0.9 134,555 - -1.3 134,555 - -1.7 134,555 - +0.6 134,555 - -0.9 134,696 + btuF MCAODC_00785 0.18 +0.6 134,696 + btuF MCAODC_00785 0.18 +0.8 134,696 + btuF MCAODC_00785 0.18 +2.4 134,706 - btuF MCAODC_00785 0.20 +0.3
Or see this region's nucleotide sequence