Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MCAODC_00345 and MCAODC_00350 are separated by 157 nucleotides MCAODC_00350 and rhsA are separated by 139 nucleotides
MCAODC_00345: MCAODC_00345 - RHS repeat protein, at 43,344 to 44,876
_00345
MCAODC_00350: MCAODC_00350 - Ankyrin repeat containing virulence factor, at 45,034 to 45,750
_00350
MCAODC_00355: rhsA - type IV secretion protein Rhs, at 45,890 to 50,122
rhsA
Position (kb) 45
46 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 44.132 kb on - strand, within MCAODC_00345 at 44.723 kb on - strand at 44.723 kb on - strand at 44.863 kb on + strand at 44.863 kb on + strand at 44.863 kb on + strand at 44.864 kb on - strand at 44.892 kb on + strand at 44.893 kb on - strand at 44.893 kb on - strand at 44.908 kb on - strand at 44.910 kb on + strand at 44.910 kb on + strand at 44.910 kb on + strand at 44.910 kb on + strand at 44.915 kb on - strand at 44.967 kb on - strand at 45.348 kb on + strand, within MCAODC_00350 at 45.646 kb on + strand, within MCAODC_00350 at 45.757 kb on - strand at 45.821 kb on - strand at 45.922 kb on + strand at 46.064 kb on + strand at 46.099 kb on + strand at 46.100 kb on - strand at 46.168 kb on + strand at 46.221 kb on - strand at 46.230 kb on + strand at 46.293 kb on - strand at 46.325 kb on + strand, within rhsA at 46.404 kb on + strand, within rhsA at 46.431 kb on - strand, within rhsA at 46.432 kb on + strand, within rhsA at 46.454 kb on - strand, within rhsA at 46.454 kb on - strand, within rhsA at 46.455 kb on + strand, within rhsA at 46.455 kb on + strand, within rhsA at 46.455 kb on + strand, within rhsA at 46.455 kb on + strand, within rhsA at 46.456 kb on - strand, within rhsA at 46.476 kb on + strand, within rhsA at 46.476 kb on + strand, within rhsA at 46.476 kb on + strand, within rhsA at 46.494 kb on + strand, within rhsA at 46.494 kb on + strand, within rhsA at 46.495 kb on - strand, within rhsA at 46.495 kb on - strand, within rhsA at 46.495 kb on - strand, within rhsA at 46.498 kb on - strand, within rhsA at 46.518 kb on + strand, within rhsA at 46.518 kb on + strand, within rhsA at 46.519 kb on - strand, within rhsA at 46.519 kb on - strand, within rhsA at 46.696 kb on - strand, within rhsA
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 44,132 - MCAODC_00345 0.51 -2.7 44,723 - -0.4 44,723 - +1.5 44,863 + -0.9 44,863 + -0.4 44,863 + +0.2 44,864 - +0.3 44,892 + +1.8 44,893 - +0.5 44,893 - +0.0 44,908 - -0.9 44,910 + -2.0 44,910 + +1.0 44,910 + -1.8 44,910 + +0.6 44,915 - -0.4 44,967 - -0.2 45,348 + MCAODC_00350 0.44 +2.8 45,646 + MCAODC_00350 0.85 +0.2 45,757 - +1.1 45,821 - -3.0 45,922 + +0.4 46,064 + -1.2 46,099 + -1.4 46,100 - -0.2 46,168 + -4.0 46,221 - +0.3 46,230 + +1.1 46,293 - -3.3 46,325 + rhsA MCAODC_00355 0.10 -3.7 46,404 + rhsA MCAODC_00355 0.12 -0.4 46,431 - rhsA MCAODC_00355 0.13 -0.4 46,432 + rhsA MCAODC_00355 0.13 -0.6 46,454 - rhsA MCAODC_00355 0.13 +0.5 46,454 - rhsA MCAODC_00355 0.13 +0.1 46,455 + rhsA MCAODC_00355 0.13 +1.1 46,455 + rhsA MCAODC_00355 0.13 +0.7 46,455 + rhsA MCAODC_00355 0.13 -1.2 46,455 + rhsA MCAODC_00355 0.13 -0.5 46,456 - rhsA MCAODC_00355 0.13 +0.1 46,476 + rhsA MCAODC_00355 0.14 +1.2 46,476 + rhsA MCAODC_00355 0.14 -0.4 46,476 + rhsA MCAODC_00355 0.14 -0.7 46,494 + rhsA MCAODC_00355 0.14 +0.5 46,494 + rhsA MCAODC_00355 0.14 -1.6 46,495 - rhsA MCAODC_00355 0.14 +0.6 46,495 - rhsA MCAODC_00355 0.14 -1.9 46,495 - rhsA MCAODC_00355 0.14 +0.3 46,498 - rhsA MCAODC_00355 0.14 -3.0 46,518 + rhsA MCAODC_00355 0.15 +0.5 46,518 + rhsA MCAODC_00355 0.15 +1.8 46,519 - rhsA MCAODC_00355 0.15 +0.7 46,519 - rhsA MCAODC_00355 0.15 +0.5 46,696 - rhsA MCAODC_00355 0.19 -1.9
Or see this region's nucleotide sequence