Strain Fitness in Escherichia coli ECOR38 around HEPCGN_22005

Experiment: Bas39

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Bas39
3,156,422	-	ackA	HEPCGN_22000	0.53	+2.8
3,156,425	+	ackA	HEPCGN_22000	0.53	+0.2
3,156,426	-	ackA	HEPCGN_22000	0.53	-0.8
3,156,426	-	ackA	HEPCGN_22000	0.53	+2.2
3,156,426	-	ackA	HEPCGN_22000	0.53	+0.2
3,156,498	-	ackA	HEPCGN_22000	0.59	-1.8
3,156,693	-	ackA	HEPCGN_22000	0.75	+0.2
3,156,772	-	ackA	HEPCGN_22000	0.82	-1.8
3,156,834	+	ackA	HEPCGN_22000	0.87	-1.1
3,156,902	+				-1.1
3,156,952	-				-0.4
3,156,993	+				-1.1
3,157,072	-				-0.1
3,157,072	-				-0.6
3,157,125	-				-2.1
3,157,158	-				-0.1
3,157,162	+				-1.6
3,157,195	-				-0.3
3,157,195	-				+0.8
3,157,302	+				+0.4
3,157,304	+				-0.3
3,157,305	-				-0.4
3,157,474	+	yfbV	HEPCGN_22005	0.33	-0.2
3,157,491	+	yfbV	HEPCGN_22005	0.36	+0.1
3,157,492	-	yfbV	HEPCGN_22005	0.37	-0.3
3,157,495	+	yfbV	HEPCGN_22005	0.37	+0.7
3,157,495	+	yfbV	HEPCGN_22005	0.37	-0.2
3,157,496	-	yfbV	HEPCGN_22005	0.38	-0.5
3,157,496	-	yfbV	HEPCGN_22005	0.38	-1.7
3,157,617	+	yfbV	HEPCGN_22005	0.64	-0.2
3,157,617	+	yfbV	HEPCGN_22005	0.64	-1.1
3,157,720	-	yfbV	HEPCGN_22005	0.87	+0.2
3,157,799	+				-0.2
3,157,799	+				+0.0
3,157,801	+				+0.7
3,157,802	-				+1.0
3,157,802	-				+0.1
3,157,814	-				-0.0
3,157,849	+				-0.4
3,157,850	-				+0.1
3,157,850	-				-1.4
3,157,889	+				-1.2
3,157,905	+				+1.1
3,157,920	-	yfbU	HEPCGN_22010	0.12	-0.1
3,158,068	-	yfbU	HEPCGN_22010	0.41	-1.5
3,158,093	+	yfbU	HEPCGN_22010	0.46	+0.2
3,158,093	+	yfbU	HEPCGN_22010	0.46	-0.5
3,158,094	-	yfbU	HEPCGN_22010	0.47	+0.3
3,158,178	+	yfbU	HEPCGN_22010	0.64	+0.0
3,158,190	-	yfbU	HEPCGN_22010	0.66	+0.5
3,158,195	+	yfbU	HEPCGN_22010	0.67	+0.4
3,158,211	+	yfbU	HEPCGN_22010	0.70	-0.1
3,158,272	-	yfbU	HEPCGN_22010	0.83	-1.3
3,158,272	-	yfbU	HEPCGN_22010	0.83	+0.2
3,158,285	+	yfbU	HEPCGN_22010	0.85	+0.1
3,158,286	-	yfbU	HEPCGN_22010	0.85	+0.0
3,158,345	+				+0.3
3,158,346	-				+0.1
3,158,346	-				+0.3
3,158,613	+	hxpA	HEPCGN_22015	0.38	-0.8
3,158,614	-	hxpA	HEPCGN_22015	0.38	+0.1
3,158,724	-	hxpA	HEPCGN_22015	0.55	-0.2